RNA id: AMCG00005105


Basic Information

Item Value
RNA id AMCG00005105
length 1457
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00005105
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15379599 ~ 15384811 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGGGCAGCCGCGCTGCACCTCTCAGACCCGGGTCGGGTGTAACAGTGCGCGGTGGAGATATGCCCCTGATGAGAAGGAGAATGAGCGCCAGTTCCTGCTGGACTTACAGTTCATCTGTGACAGGCTGCAGAAACTCCGCATTAGTGATGTGGTCCTGGCTAAGgCCATAAATACCCCTGCGCATCTCCTGGACCCCAGTCAGCTGATAGGGATGAACTCTGTCCCTGACCTTACCCCCTCTCTTGCCAACCTTGGCAAACAGCCCATGGGGGGACATGGCCCAGGCTCTTTGCCCCCCCAGCCCTCAGCAGAAGGTGCCCGGTGCTCCCGGCAGGGCGAGAGGAAGGAGCCGCGAATCATCAACTTGTCATTCACGTATGAGATTCAGCTCAACAAGGCCGAGAAGGCCTGGAAGCCTACAATTAAGCAGGCTCCCACAGTGGGTGATGACCCCGAGGTCATTAAGACCCAGGAGCTGTTCCGCAGGGTGAACGGTATCCTGAACAAGCTCACCCCGCAGATGTTCCAGCCGTTGATGTGTCAAGTGAATGAGCTGACCATCGACACAGAGCAGCGACTCCAGGGTGTTGTGGAGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCTCATACGCCAATATGTGCCAGTGCCTTCTGAGGCTCAAAGTCCCGGCTGCTGACAAGCCGGGAGAGACAGTGCCTTTCCGCACTCTGCTTTTGAACCTCTGCCAGATGGAGTTTGAGACGGAGGAGGATGGAGACGAGGGCGAGGAGCAGCAGCGTCTACGTGCCGAGCTGCAGGAGGCCAAGCGCAAGGCCCAGCGGCGCTTGCTAGGCAACATCAGGTTCATTGGGGAGCTGTTCAAGGTGAAGATGCTGGTGAAGAAAACCATGCACAATTGCATCGTCAAGCTGTTGAAGAACCACGAAGAGTCCCTAGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACTTGGAGACCGTCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCAGATCATCAAAGAGAGGAAGACCTCCCCTCGAATCTGCTTCTTGCTGCAGGACGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCCGGAGGGGTGACCAGGGTCCTAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAGGCGCACCATGAGCAGATCAAGGTGCAGCAGCAGCTCATGAGCAAGAAGGACAACCGACGTGATGCGAACTTCAGCGAAAGTGTCCTGCCACGCGTCGGTCGggccagagcagagcaggcCAGGAAGAGAGGGACTTTTGCGAAAGCACTAGAAATAGAAGCACCAGTCCTTCTCTGGCGAAGATGAAAGCATCAACATACGATCATTAAATTTCtctgtttaatttacaaattataatgatgatgtttTTCTGTTCAAACTAA

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182931 lncRNA upstream 121936 15255889 ~ 15257663 (+) True G145435
TU182914 lncRNA upstream 135353 15242385 ~ 15244246 (+) True G145418
TU182891 lncRNA upstream 226860 15142484 ~ 15152739 (+) True G145398
TU182866 lncRNA upstream 251028 15126586 ~ 15128571 (+) True G145379
TU182851 lncRNA upstream 282587 15094969 ~ 15097012 (+) True G145369
TU183118 lncRNA downstream 568804 15953615 ~ 15954678 (+) True G145577
TU183140 lncRNA downstream 651801 16036612 ~ 16047194 (+) True G145593
TU183182 lncRNA downstream 844477 16229288 ~ 16231853 (+) True G145630
TU183314 lncRNA downstream 1529204 16914015 ~ 16914225 (+) True G145731
TU183329 lncRNA downstream 1552016 16936827 ~ 16937075 (+) True G145744
AMCG00005102 mRNA upstream 32221 15337268 ~ 15347378 (+) True AMCG00005102
AMCG00005103 mRNA upstream 69722 15309090 ~ 15309877 (+) True AMCG00005103
AMCG00005104 mRNA upstream 95149 15258397 ~ 15284450 (+) True AMCG00005104
AMCG00005090 mRNA upstream 137400 15200846 ~ 15242199 (+) True AMCG00005090
AMCG00005091 mRNA upstream 179469 15197034 ~ 15200130 (+) True AMCG00005091
AMCG00005110 mRNA downstream 80272 15465083 ~ 15492249 (+) True AMCG00005110
AMCG00005119 mRNA downstream 233800 15618611 ~ 15627259 (+) True AMCG00005119
AMCG00005118 mRNA downstream 257858 15642669 ~ 15662088 (+) True AMCG00005118
AMCG00005117 mRNA downstream 277283 15662094 ~ 15680728 (+) True AMCG00005117
AMCG00005116 mRNA downstream 368371 15753182 ~ 15755418 (+) True AMCG00005116
TU182286 other upstream 2598429 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 3716231 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 7648599 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 9955478 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 11007510 4371709 ~ 4372089 (+) True G143471
TU183561 other downstream 2380446 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 4194762 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 4797543 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 4888702 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 5136838 20521649 ~ 20524819 (+) True G146575

Expression Profile