RNA id: AMCG00005104


Basic Information

Item Value
RNA id AMCG00005104
length 3438
RNA type mRNA
GC content 0.54
exon number 20
gene id AMCG00005104
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15258397 ~ 15284450 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCAAagccccaccaccaccaccatcatcatcatcatcatcatcgcaGCGTCTCCGGCGGGGAGCGGTGCGCCCCTGAATGCGGCCCCCCGGAAACAAGCGCCAGCTCTGCTTCCCGGGTTGTGCTCAATCAGCCCAGTGCGCTTCATGCAACCAAAATCCGTTGAGAGGAAGCTTCCAGCTCTAGATGTGGTCTTTGCAGGGGACACCTATAGTCCCATGCCTGCTTTTACATCATGGTTTTTGCTCCTCATCCTAGAGTCTACTGATGCTCACAAGATCAGAAAAGGACAGACTGAACCTCAAAATGATGAGACGGCAAACGATACTGAAGAAAACATGGAGATCCCCAGGGCTGTTCCTGAGGTTCCTTCATCTTCCTACAGAGGGAAGGGAGAAGACTATGCTTATCCACAAAAGCTCAGAAGAGGTCAGAATCAACCTGAAAATGAGGAGTCTAACTTTGATAGTGAAGAAGACATGGAGGTCTTGGATGAGGATGAGCATGAGGAAGAGGAGAGCGTTCCTGTGGTTTATGTATCACCGTACAGAGGGGACAGTAGTGAGGGGAGAGAGGACGTCCAGAGCAAGGCTGAAGAAGTTGCCAAGTGGTGGGGGGAGTGGAGTTCGTGGTCCACCTGCTCTCGTACCTGTGGAGGTGGGGTCCGCTCCCAGGAGAGGCACTGTCTGCAACAGAGGCTAATTGCAACACAAAATGTGAGCACCACCATTTGCGTTGGGTCTTCAAAACAGTACCAGCTGTGCCAAAATCAGCCTTGCCCTAACAATGGGATCAGTTTTAAACAGCAGCAGTGTTCGTCTTTCAATGCTAAATCCTTTGGCAGGAAGCATTATCTGTGGGTGCCCCTCTATCCAGATGACTACATCAACATATCGAACAAGCCCTGTGATCTGCAGTGCACCACCACCAGTGGAGAGCGCCAGCTGCTGGTCCCGGCACATGATGGTACCTACTGCAGGGACGGCATCTACCAGGGCATCTGCATCGAGGGCAAGTGTGAGGTGGTTGGGTGTGACGGGAAGCTGTACTCCAGTAAAACTGTAGATAAATGCGGAGTGTGTGGTGGAGATGGCAGCTCATGCTATCGCATCTCGGGATCCTACAGAAAAGGAATCACACAGTTAGGTTATCTGTTTATAACCAACATCCCTGCAGGAGCCACAGACATCCAAATCATTGAAAGAAGGaagacagaaaatattttaGCTCTCTCAGATGAGGCAGGTCACTTCTTCTTCAATGGCAACACTGTGATTGACAATCCCAGGAATTTCCGGGTGGCGGGCACCATCTTCAAGTACAGAAGGCCATCCAACCCGTTTTCTGACGGTTTTGAATACATCATTGCACAGGGACCCACAAACCAAGGTCTGAATGTCATGtACTATAACTTAAATGGGAAGATGCCTCACATCACATATGAGTACACAGTGCCCAGTTCTCCAGAGCTCAAGACCGCCCCTCCTGTGATGGACACGGACCTCTTTGTCCCAGAAGCTGCTATGGAAAACACTGGAAAGGGTGTGGGGCTGCAGCCAGGGCAGGACCAGCCAGGTCCCAGCAATCACTTCATCAATACATCAGTGGAGCTCTTGTATGATGACAATGAAATCAACGGTGGAGAGGAGTACAAGCTGGGGAATTACACCACTCCGCTAACCTCTGACAGTGGGCCAGCTGCACACATAGACCCTGAAGGGTTGGTTTGGGAGCTTCAGACGCCCCTCAACCTGTCTGATATCCCCGGTGTCCTCCTGTTCAAGCCTGTTAGCAAAGTGTTTCCAAACAATCTGCACGACCATGATGGGGCCACCAGCTTTGGTTCTAATCTGATCCATGGCAGCTCCAGCAACCAAAATGGAACTCGTAGGCCTCCTAAGCCCCTCTTGAAGAGTCTGTTTTTCGGCATCCTGTACAGGCCTGGGGGTGTGCGGAGGCTGTGCAAGAACAGTTCGGCGTACGCTGCTCTTTGTCTCAGCTCAGGGAGCACTGAGGGACAACCGGCCCTGCAGAACTCAAGCCTGTCTCTGGACAACAACCTGTCTCTGGAGACATACCCAAACTCGGAGCTCCACACAGGCCCAGAGGAAAGACTTCTGACAGATCTGGAGCCCCCCCTTTCAAACTCCACCTCCTCATACAACCGGGACCTTATCAATCTGCACCAGGTTGAGCCTATACAAGCTCCCAGCACAGAGAGCAACGAGTTTGAGGTGGGATCTATAGACCATGACATCAGCCTGGCAGACATGTACAGATGGAAGGTATCTGCGTATGCACCCTGCAGTTCAACATGTACTACAGGAATAAGCACCTCTTATGCGATGTGTGTTCGCTATGATGGAGTTGAGGTCGATGAAAGCTACTGTGATGCTTTAACGAGGCCAGAGCCCACTCACGAATTCTGCACAGGGAAGGAGTGCCCTCCAAGGTGGGAGACCAGCCGCTGGAGTGAGTGCTCCCGGACCTGTGGCGAGGGCTACCAGTTCCGCAGTGTGCGCTGCTGGAAAATGATGGCGCCAGGGTTCGACAGCTCTGTGTACGATGACCTGTGCGAGGCCACAGAGGTCCCGAGGCCCATGGCACGCAAACTCTGTAAGAATAAGGGCTGTGGCCCTCAGTGGGAGAGCTCAGAGTGGTCTGAGTGCTCGGCGCGGTGCGGTGGGAAGGGAGTCATGAGACGGGAAGTGCGCTGCTCCATGGACACGCGGCTCTGCAACGAGTCGGCCAAACCACTGAGCGAGAGGCAATGCGAGGGCCCGCTCTGCGACCGGAGGTGGACTGTGTCAGACTGGGGGCCGTGCTCGGGGTCCTGTGGGGAGGGCCGGATGAAACGATATGTGGTCTGCAAGAACAGCAATGGGAATGTGATCTCCGACACACAGTGCGATCTGGACCTCAAGCCCCTGGCTGTGTACCCCTGTGGGGATAAGAACTGCCCTTCCCACTGGGTGGAGCAGGAGTGGGAGCAGtgcaaTGCCACCTGCGGCCGGGGTGTGAAGACTCGGCAGGTGATCTGTGCCGGTCTGGAGAATGGGGTGTTTAAGGAGTAcccagagcagagctgtgaACAGGCAAGGAAACCCGAGGAGGAAACGGCCTGTTTTGAGAGGCCCTGTTCCAAGTGGTTCACTACATCTTGGTCACAGTGCAGTAAAACGTGTGGCAGTGGTGTAAAAGTGCGGGAGGTGAAATGCTACCAGGGAGAAGAGATTGGCCACAGCTGTGACTCGGGGTTTAAACCAGAGTTCAGGCAGACGTGTGAAGTCCAGCCCTGCCCGACTGAAGCCCCAGACGATGCCTGTCAGGACAAGGCTACTGCAAACTGTGCGCTTGTTTTGAAAGTGAAGCTCTGCACACACTGGTACTACAGAAAGGCCTGCTGTCTATCCTGCACAAACAAGTCCCAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182931 lncRNA upstream 734 15255889 ~ 15257663 (+) True G145435
TU182914 lncRNA upstream 14151 15242385 ~ 15244246 (+) True G145418
TU182891 lncRNA upstream 105658 15142484 ~ 15152739 (+) True G145398
TU182866 lncRNA upstream 129826 15126586 ~ 15128571 (+) True G145379
TU182851 lncRNA upstream 161385 15094969 ~ 15097012 (+) True G145369
TU183118 lncRNA downstream 669165 15953615 ~ 15954678 (+) True G145577
TU183140 lncRNA downstream 752162 16036612 ~ 16047194 (+) True G145593
TU183182 lncRNA downstream 944838 16229288 ~ 16231853 (+) True G145630
TU183314 lncRNA downstream 1629565 16914015 ~ 16914225 (+) True G145731
TU183329 lncRNA downstream 1652377 16936827 ~ 16937075 (+) True G145744
AMCG00005090 mRNA upstream 16198 15200846 ~ 15242199 (+) True AMCG00005090
AMCG00005091 mRNA upstream 58267 15197034 ~ 15200130 (+) True AMCG00005091
AMCG00005085 mRNA upstream 108007 15131732 ~ 15150390 (+) True AMCG00005085
AMCG00005086 mRNA upstream 147131 15108883 ~ 15111266 (+) True AMCG00005086
AMCG00005084 mRNA upstream 165933 15086784 ~ 15092464 (+) True AMCG00005084
AMCG00005103 mRNA downstream 24640 15309090 ~ 15309877 (+) True AMCG00005103
AMCG00005102 mRNA downstream 52818 15337268 ~ 15347378 (+) True AMCG00005102
AMCG00005105 mRNA downstream 95149 15379599 ~ 15384811 (+) True AMCG00005105
AMCG00005110 mRNA downstream 180633 15465083 ~ 15492249 (+) True AMCG00005110
AMCG00005119 mRNA downstream 334161 15618611 ~ 15627259 (+) True AMCG00005119
TU182286 other upstream 2477227 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 3595029 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 7527397 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 9834276 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 10886308 4371709 ~ 4372089 (+) True G143471
TU183002 other downstream 99793 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 2480807 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 4295123 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 4897904 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 4989063 20273513 ~ 20279786 (+) False AMCG00005272

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_05843593_05862033.mRNA True 3889 mRNA 0.50 18 CI01000004 5843506 ~ 5862544 (-)