RNA id: AMCG00005085


Basic Information

Item Value
RNA id AMCG00005085
length 2840
RNA type mRNA
GC content 0.45
exon number 15
gene id AMCG00005085
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15131732 ~ 15150390 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCAATTAGGTCTCACAGTTATAATGCTGTcaatatagtaaaaaaaaaacacatatatataaaatactgaccCTGCAAGTTTATGAACACCTTTGGGGGGAAAATGaaaaagaagatcCACGGACAATGTTCATTCAAGCCTGTATTCCAGCTGATAAATGTCAATCTGAAGTGGATTCTCATCCTGAACTATGAACTCTCCCTGTTTGGAAATGCGTTTGGATGGACCTACCACACATCTGATTCGACTATGAACTGGAACGAAGCTAGAGACTGGTGCCAGGAACATTACACAGACCTCGTGGCAATTCAGAACAAAAAGGAAATTGCCCACTTAAATcaaacattagaaaaaaaagataattattaCTGGATTGGGATTCGTAGATACAATGATGTCTGGACCTGGGTTGGAACCAACAAAACGCTCACTAATGAATCTGCAAACTGGGCCACCAATGAACCAAATAACAAACTACAGGAGAACTGTGTGGAAATCTATATAAAAAGGCATTACGATGCTGGAAAATGGAATGATGACCCGTGTACTAATGTTAAACATGCATTATGCTATAAAGCTCAGTGCAGCGAAACAGTATGCGGGCCTCATGGTGAATGTGAAGAAACAATTGAACACTATAACTGTAGTTGCGCCAGAGGATTTAAAGGAGCACAGTGTCAGTATGCTGTCAATTGCACAGCCCCTCCAAAGCCAGACTATGGATATATGAACTGCTCAGGGCCCTATGGTAATCACAACTTCAACTCTACATGCGAGTTGCATTGTGCTGAGGGCTTCTCTTTAGACGGCGCAAACAATGTGACGTTCACGTGTGACTCTTCGGGGGAATGGATAGGACCAGTGCCAGCATGTCAAGctgtaaCATGTGAAGCCATGTCCAAACCGGACTATGGAGGCATTGACTGTTCAAGCCCCTATGGAATTAACAGTTTCAACTCCACCTGCACATTTCAATGCTCTGACGGTTTTCTGTTATTGGGATCAAAAGAGGTGACATGCAATGCTTCAGGAAAATGGACAGGACAGAAGCCAAATTGTTCAGTCCCTTTTGGAAATAACAGTTTCAACTCCACCTGCACATTTAATTGCTATGGCGGTTTTCTGATATTCGGATCAAAAGAGGTGACATGCAGTGCCTCGGGACAATGGACAGGAAAGAAGCCAATTTGCGCAGATCTCATGAGTGGTGGGACAGGGGTGATGGCATGGACTTACCATCACAATATCAAGCATAACATGAACTGGAACGCAGCCAGGCAGTGGTGCAGAGAACACTTCACAGATATGGTGGCAATACAGAACCAAAACGAAATTGTATATCTTAATACAACTTTACCAGCGAACAAAGGATATTACTGGATAGGTATTAGGAAAATCAATGGTGAGTGGACATGGGttggaacaaacaaaacattgacaaaAGAAGCCGAAAACTGGGCTACGGGTGAACCAAACAACAAAGGAGATGGTCAAGACTGTGTGGAGATTTACATAAAAAGACCGAAGGATAGTGCAAAATGGAACGATGAACCATGCACCAAACAAAAGGGAGTTTTGTGTTATCAAGcatctTGCAACAAAACAACCTGCGGTCGCTGGGGTGAATGTGTGGAAACAATTGGGAGCtaccactgtgtgtgttttgagggATTCAAGGGACCACACTGTGATGAAGCTGTGGAATGTGAAACCTTGCAAGCTCCAGACCAAGGTGCCATGTCATGTGAGCACCCATTTGAGCCTTTTCGCTTCAACTCAACATGCACGTTCCAGTGTGACCCAGGCTTTGTAATCACTGGATCCCAGCACGTGCGCTGCCAGGCTGCAGGCCAGTGGACTTTACTTACACCATTGTGTCAAGCTGTGACATGTTCAGCACTAAACGTCCCTGGAAGAGTATTCCAGAACTGCACCCACCCCATCGAAGTAAACAGTTTTAATTCCACCTGTGAGTTCAGCTGTGAAGCAGGATTTCTATTGAAAGGATCAGACAGGGTTCGGTGTGACTCCAGTGGAACATGGACAAATCACACACCAACATGTGAAGGTACAAATCTTTACAATAGCTTTGAAATCATTATTGCACAAATATCATTTGGGACAGCCTGTATAACTgattttggaaatgtaattacagtTATTACATGTGGTTCCCTTGCACCTCCATCCAAAGGAAGAGTATCCTGTAATCATCCTGTCAAAGACTTCAGCTACAACTCATCTTGTGAGTTTGTCTGTGATGAGGGCTATTCGCTGCTTGGAGAGAGCACTGTCCACTGTACAGTCACAGGAACATGGACAGCAGAGACACCACCGTGTAAAGCTGTGAAGTGTGAAGAGCTCCAGAGTCCTTCTCATGGCACCATTGAGTGTGAGCACCCCATAGAGCCCTTCAGCTACACCTCAGAGTGCAGGCTGACCTGTGAGGAAGGCTTTCTCCTGAACGGGACCAACATTACACTGTGTACCTCACAGGGGCTCTGGACTCACCCGACTCCACACTGTCAGGTCATGCACTGTGACCCCCTGGAGGCATCGCCACCACTCTCGATGAACTGCTCTCACCCACTGGGGAACTTCAGTTTTAGCTCTCAATGTGACTTCACCTGTGTTAAGGGTTATAAGATCAATGCAACAAGAAGACTGGCCTGCAGCTCAGCTGGGATTTGGAGTGAAACTAAACCTTCCTGTAGAGCCCAAGAAATGCCCGTTGGGATGTCAATGTTGCTCTACGCAGGTGTcagctctgcagcagcagtgtcTGCTCTTCTCCTGAGTGGCCTCACTTTCCTCATTGCAAAACGCCTTTTAAGGAGA

Function

GO: NA

KEGG:

id description
K06496 SELP, CD62P; selectin, platelet

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182866 lncRNA upstream 3161 15126586 ~ 15128571 (+) True G145379
TU182851 lncRNA upstream 34720 15094969 ~ 15097012 (+) True G145369
TU182778 lncRNA upstream 156346 14973110 ~ 14975386 (+) True G145307
TU182742 lncRNA upstream 270576 14838584 ~ 14861156 (+) True G145278
TU182745 lncRNA upstream 278991 14846088 ~ 14852741 (+) True G145281
TU182914 lncRNA downstream 91995 15242385 ~ 15244246 (+) True G145418
TU182931 lncRNA downstream 105499 15255889 ~ 15257663 (+) True G145435
TU183118 lncRNA downstream 803225 15953615 ~ 15954678 (+) True G145577
TU183140 lncRNA downstream 886222 16036612 ~ 16047194 (+) True G145593
TU183182 lncRNA downstream 1078898 16229288 ~ 16231853 (+) True G145630
AMCG00005086 mRNA upstream 20466 15108883 ~ 15111266 (+) True AMCG00005086
AMCG00005084 mRNA upstream 39268 15086784 ~ 15092464 (+) True AMCG00005084
AMCG00005096 mRNA upstream 53563 15057323 ~ 15078169 (+) True AMCG00005096
AMCG00005094 mRNA upstream 90467 15038438 ~ 15041265 (+) True AMCG00005094
AMCG00005095 mRNA upstream 128625 14998337 ~ 15003107 (+) True AMCG00005095
AMCG00005091 mRNA downstream 46644 15197034 ~ 15200130 (+) True AMCG00005091
AMCG00005090 mRNA downstream 50456 15200846 ~ 15242199 (+) True AMCG00005090
AMCG00005104 mRNA downstream 108007 15258397 ~ 15284450 (+) True AMCG00005104
AMCG00005103 mRNA downstream 158700 15309090 ~ 15309877 (+) True AMCG00005103
AMCG00005102 mRNA downstream 186878 15337268 ~ 15347378 (+) True AMCG00005102
TU182286 other upstream 2350562 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 3468364 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 7400732 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 9707611 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 10759643 4371709 ~ 4372089 (+) True G143471
TU183002 other downstream 233853 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 2614867 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 4429183 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 5031964 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 5123123 20273513 ~ 20279786 (+) False AMCG00005272

Expression Profile