RNA id: AMCG00005084


Basic Information

Item Value
RNA id AMCG00005084
length 2139
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00005084
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15086784 ~ 15092464 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTTCAGAGAGCAGCGCACTGAGGAGCTGCACCCTGGAGGAACGGCTCCTCAGCCTCCCGTCTGGCCTCAGTATGTACTCGGCCCTGCTCCAGGACGGAAAGCCAGCCTCTGTCTTCGTCTACAAGCAGGGCAATGAGGATAAAGTCAACAAAGCGGCTAAGCACCTGAAGACCCTGCGGCACCCCAGCCTACTGCGCTTCCTGTCCTGCACAGTGCAAGCCGGCGAGATCCACCTGGTGACCGAGCGCGTGCGGCCGCTGGATCTCTTGCTGGACAGCCTGTCCCCGGAGGAGGTCTGCGCCGGCCTCTACGACGTCCTGCAGGCACTTGTCTTCCTGCACGAGAGAGGTAAATCCAGCCATAATAATGTGTGCATGTCATCAGTCTTTGTGAGTGAAGATGGTCACTGGAAACTTGGGGGAATGGAGACAGTGTGCAAATTCTCCGAGGCAACTCCTGAGGTTGAAGGCTTTAAAACCCTGCCAGACAATTTTGGGCATTCCCGAGATGCTTTTTCTTTCGGCTTGATGGTGGAAACCTTTATTCCACTCCTGACTGACTATGTGTCTGAAGAGCTGTCAGACAGTTTCCGCAGCACCCTGCAGAGCAGTCTGCTGAACCCTGACCCCTTGGCGCGCCCATCTCTCAGCAGCCTCCTGACTCACAGTTTTTTCAGGAATGATTTCCTAGAGGTGGTGAATTTTCTGAGGAATCTGACTCTGAAAACGGAAGAGGAGAAGAATGAATTTTTCAAGTTCCTCCTGGACAGGGTTCAGAGTCTGCCCGAGGAGCTGATCGCCACACGCCTTGTCCCCAAACTTCTGAACTCCCTGGTGTTTGCAGAACCTACAGCCATTAAAAGTTTCCTCCCCCATCTCCTCATGCCAAAGAAGGACTCAGGCGACGGCAGCCAGGAGTGTCTCCTCTCCGTGTCTATCTACCGTAAATACATCATCCCCCAGCTGCTGAAGTTGTTCAAAGTGAACGAGGAGCACGTGAGGATGGTGCTGCTGTCCCATATCGACGTCTACGCGGAGCTGTTCTCCAACGAGGAGCTGAAGAATCAGATACTACCTCAGGTTTTACTTGGAATGAGAGACACTAGTGACAGTCTGGTTGCCATGACCCTGCAGAGCCTGGCAGTGTTGGTCCCTTTACTTGGCGCTCAGGTTGTGGTTGGAGGAGAAAGAACAAAGGTCTTCAAACGGACTACACCCAACTTTACCAAGTCAACGGAGGTCACTCCTGAAGGCTCTCCAGTTCACATTGTCAGTGCTTTAAAAACCCCACTGTCCAAGCCCTCAAAAATATTGAAGTTGTTCTCTAAGCCCTCTGAAACACGAGAGCTCGTCTTGGAGAACATGGACTCTCTCAGCGCAGCAGGACAACCTATGAAGCTACCAACAAAATCAGGTTCTGTAATCAATAAGGATGTAATGAAATTAACCTTAAATGGATTTACTGACACAAAGGCCAGTGCTGGAGATAATGGCTTGGATATGAGTGCCAGGCCTGTAGAGGAATGGCCGGATTGGGCTGATGCTGAGGACAGTGTGCAAAACCCAGacagaaccaaaacaaacactgaaaccaACATGGAAGAGGAGCCTTGGGAAGACTTTGAACCCTCTAATGAAGAATCTGAAGTGACTTCTAACCCATTGTCTTTTACATCAACGGCGAATTCACCTCAGAGTGATTCTGCAAAAAGTCCCGTGTCTGAACCGACAAAGAAATCCAAAGCTCTTAAGCTGGCGACTGCATCTAAACCCGCCTCTGAGAACCAGCACTCGGCCTGGGGCAGCGACTGGGACCAGAGCGAGGATCTGAGCACAAAGAAATCATCAATGGAAACGGCAAagcaaaaacacttaaaaaaaggtGCTGGTTTAGGAGAGGAATTCACAATAGAgattaaaaagaaggaaaaagatcCTGAATTGGACTTCTTTGCCGACATGGTCCCAGACATTAAACTGTCCACAGCAGCTCTGTCATTAGCTTCTACAAGCACAGACACGGGACTGGGGACCTCAGGGGTCGAACCTGCAGGGCAAACTCAGCCCGTGGATCTGGATTCTTCAGTAAACAAGTTGACAATTACTGCAAGGTTTGCTGCGGCTGACGTGACCGAA

Function

GO: NA

KEGG:

id description
K17542 SCYL3; SCY1-like protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182778 lncRNA upstream 111398 14973110 ~ 14975386 (+) True G145307
TU182742 lncRNA upstream 225628 14838584 ~ 14861156 (+) True G145278
TU182745 lncRNA upstream 234043 14846088 ~ 14852741 (+) True G145281
TU182730 lncRNA upstream 295657 14778238 ~ 14791127 (+) True G145268
TU182707 lncRNA upstream 409187 14676709 ~ 14677597 (+) True G145251
TU182851 lncRNA downstream 2505 15094969 ~ 15097012 (+) True G145369
TU182866 lncRNA downstream 34122 15126586 ~ 15128571 (+) True G145379
TU182891 lncRNA downstream 50020 15142484 ~ 15152739 (+) True G145398
TU182914 lncRNA downstream 149921 15242385 ~ 15244246 (+) True G145418
TU182931 lncRNA downstream 163425 15255889 ~ 15257663 (+) True G145435
AMCG00005096 mRNA upstream 8615 15057323 ~ 15078169 (+) True AMCG00005096
AMCG00005094 mRNA upstream 45519 15038438 ~ 15041265 (+) True AMCG00005094
AMCG00005095 mRNA upstream 83677 14998337 ~ 15003107 (+) True AMCG00005095
AMCG00005097 mRNA upstream 122400 14901810 ~ 14964384 (+) True AMCG00005097
AMCG00005078 mRNA upstream 250301 14813861 ~ 14836483 (+) True AMCG00005078
AMCG00005086 mRNA downstream 16419 15108883 ~ 15111266 (+) True AMCG00005086
AMCG00005085 mRNA downstream 39268 15131732 ~ 15150390 (+) True AMCG00005085
AMCG00005091 mRNA downstream 104570 15197034 ~ 15200130 (+) True AMCG00005091
AMCG00005090 mRNA downstream 108382 15200846 ~ 15242199 (+) True AMCG00005090
AMCG00005104 mRNA downstream 165933 15258397 ~ 15284450 (+) True AMCG00005104
TU182286 other upstream 2305614 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 3423416 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 7355784 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 9662663 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 10714695 4371709 ~ 4372089 (+) True G143471
TU183002 other downstream 291779 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 2672793 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 4487109 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 5089890 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 5181049 20273513 ~ 20279786 (+) False AMCG00005272

Expression Profile