Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00005118 |
| length | 639 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 6 |
| gene id | AMCG00005118 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030140.1 |
| NCBI id | CM030140.1 |
| chromosome length | 22460246 |
| location | 15642669 ~ 15662088 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0019483 | beta-alanine biosynthetic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0006212 | uracil catabolic process | biological_process |
| GO:0006214 | thymidine catabolic process | biological_process |
| GO:0006222 | UMP biosynthetic process | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004158 | dihydroorotate oxidase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0017113 | dihydropyrimidine dehydrogenase (NADP+) activity | molecular_function |
| GO:0051539 | 4 iron, 4 sulfur cluster binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| K00266 | gltD; glutamate synthase (NADPH) small chain |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU182931 | lncRNA | upstream | 385006 | 15255889 ~ 15257663 (+) | True | G145435 |
| TU182914 | lncRNA | upstream | 398423 | 15242385 ~ 15244246 (+) | True | G145418 |
| TU182891 | lncRNA | upstream | 489930 | 15142484 ~ 15152739 (+) | True | G145398 |
| TU182866 | lncRNA | upstream | 514098 | 15126586 ~ 15128571 (+) | True | G145379 |
| TU182851 | lncRNA | upstream | 545657 | 15094969 ~ 15097012 (+) | True | G145369 |
| TU183118 | lncRNA | downstream | 291527 | 15953615 ~ 15954678 (+) | True | G145577 |
| TU183140 | lncRNA | downstream | 374524 | 16036612 ~ 16047194 (+) | True | G145593 |
| TU183182 | lncRNA | downstream | 567200 | 16229288 ~ 16231853 (+) | True | G145630 |
| TU183314 | lncRNA | downstream | 1251927 | 16914015 ~ 16914225 (+) | True | G145731 |
| TU183329 | lncRNA | downstream | 1274739 | 16936827 ~ 16937075 (+) | True | G145744 |
| AMCG00005119 | mRNA | upstream | 15410 | 15618611 ~ 15627259 (+) | True | AMCG00005119 |
| AMCG00005110 | mRNA | upstream | 150420 | 15465083 ~ 15492249 (+) | True | AMCG00005110 |
| AMCG00005105 | mRNA | upstream | 257858 | 15379599 ~ 15384811 (+) | True | AMCG00005105 |
| AMCG00005102 | mRNA | upstream | 295291 | 15337268 ~ 15347378 (+) | True | AMCG00005102 |
| AMCG00005103 | mRNA | upstream | 332792 | 15309090 ~ 15309877 (+) | True | AMCG00005103 |
| AMCG00005117 | mRNA | downstream | 6 | 15662094 ~ 15680728 (+) | True | AMCG00005117 |
| AMCG00005116 | mRNA | downstream | 91094 | 15753182 ~ 15755418 (+) | True | AMCG00005116 |
| AMCG00005120 | mRNA | downstream | 317751 | 15979839 ~ 15991378 (+) | True | AMCG00005120 |
| AMCG00005122 | mRNA | downstream | 331278 | 15993366 ~ 16006829 (+) | True | AMCG00005122 |
| AMCG00005121 | mRNA | downstream | 376123 | 16038211 ~ 16043140 (+) | True | AMCG00005121 |
| TU183002 | other | upstream | 258057 | 15384243 ~ 15384612 (+) | False | AMCG00005105 |
| TU182286 | other | upstream | 2861499 | 12780580 ~ 12781170 (+) | True | G144940 |
| TU181952 | other | upstream | 3979301 | 11662681 ~ 11663368 (+) | True | G144677 |
| TU180912 | other | upstream | 7911669 | 7729389 ~ 7731000 (+) | False | AMCG00004870 |
| TU180621 | other | upstream | 10218548 | 5423703 ~ 5424121 (+) | True | G143626 |
| TU183561 | other | downstream | 2103169 | 17765257 ~ 17771525 (+) | True | G145932 |
| TU184056 | other | downstream | 3917485 | 19579573 ~ 19579807 (+) | True | G146305 |
| TU184341 | other | downstream | 4520266 | 20182354 ~ 20184643 (+) | True | G146519 |
| TU184347 | other | downstream | 4611425 | 20273513 ~ 20279786 (+) | False | AMCG00005272 |
| TU184405 | other | downstream | 4859561 | 20521649 ~ 20524819 (+) | True | G146575 |
