RNA id: AMCG00009123


Basic Information

Item Value
RNA id AMCG00009123
length 1819
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00009123
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26565688 ~ 26575442 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTGTGACTTTCCCAATTCTGTCTTTGTGTATGACAGGTTGGTCTCtgtgcccctctctctccatcctctgtgtgtccctgtcatGTCTGATAACGGAGAGCTGGAGGACAAACCACCCGCACCCCCTGTCAGAATGAGCAGCACAATCTTCAGCACTGGTGGCAAGGACACAATGTCTGCCAACCACAGCTCCAAGCCCCTGCCCTCCGTGCCCGAGGAGAAGAAACCCCGCAACAAGATCATCTCCATCTTAACTGGGGCAGAGAAAAGTCGCAGGAAGACAGACAAGGACAAGGAGCGCCCTGAGATCTCTCCCCCCTCAGACTTTGAACACACTATCCATGTGGGCTTTGATGCAGTGACGGGAGAGTTCACTggCATGCCAGAGCAATGGGCTCGGCTGCTGCAGACCTCCAACATCACCAAGTCTGAGCAGAAGAAGAACCCGCAGGCTGTCCTGGATGTACTCAAGTTCTACGACTCCACCGGCAACACCAGGCAGAAGTACCTCAGCTTCTCATCGTCGGACAAAGATAGCTTTCCATCGGGAACACAGACACCTGCCAAGAAGAGTACAGAGCCCTCCCCTGCCACCATGCTCAAGgatgctgatgatgatgaggaggatGAAGAGGCCCCTCCCCCCATTGTGGCTCCACGTCCTGAACACACCAAGTCTGTGTACACACGCTCCGTCATCGACCCCATCCCCCCGCCACCGGTCAATCCTGATGGGGATGCCGCCTCCAAGGCTGCTGACAGACAGAAGAAGAAAGCCAAGATGACTGATGAGGAGATCATGGAGAAACTGAGAACCATAGTCAGTATTGGAGACCCTAAGAAGAAGTACACTCGATATGAGAAGATTGGACAGGGGGCCTCTGGTACAGTATTTACAGCCATCGACGTTGCCACAGGACAAGAGgtgGCTATTAAGCAGATCAACCTACAGAAACAACCCAAGAAGGAGCTAATTATCAATGAGATCCTGGTAATGAAAGAGCTGAAGAACCCCAACATTGTCAACTTCTTAGACAGTTTCCTGGTAGGAGATGAGCTCTTTGTGGTGATGGAGTACCTGGCTGGAGGCTCTCTGACAGATGTGGTGACTGAGACCTGCATGGACGAGGCACAGATAGCTGCTGTGTGCAGAGAGTGTTTACAAGCACTGGAGTTCCTTCATGCCAACCAGGTCATTCACAGAGACATCAAGAGCGACAACGTACTGCTGGGAATGGACGGCTCTGTCAAACTCACTGATTTTGGGTTCTGTGCCCAAATCACCCCAGAGCAAAGCAAACGCAGCACTATGGTGGGCACCCCTTACTGGATGGCCCCCGAAGTGGTCACGCGGAAAGCCTATGGCCCCAAAGTGGATATCTGGTCCCTGGGCATCATGGCTATCGAAATGGTAGAGGGTGAGCCCCCCTACCTCAATGAGAACCCATTGAGGGCACTGTACCTGATTGCCACTAATGGCACCCCAGAGTTACAAAACCCAGAGAAGCTCTCGCCCATATTCAGAGACTTCCTGAACCGTTGTCTTGAGATGGACGTGGAAAAGAGGGGCGGTGGAAAAGAGCTGCTGCAGCACCCCTTCCTGAAGCTGGCCAAGCCTCTCTCAAGCCTGACGCCCCTCATCCTAGCAGCCAAGGAGGCCATGAAGAGCAATCGCTAGCTTGCCATCACTGCCAAGCCCTCTCTCCCAGCCCACCTAAGGACATCAATCTCTCCCAGCCTCCCTGAGGACATCAAGTCCTCCACCACTGTGCCATTCACCACAGaattcccctcccccccccccccaactccttGT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04410 PAK2; p21-activated kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68395 lncRNA upstream 25488 26538319 ~ 26540200 (+) True G54724
TU68381 lncRNA upstream 74527 26489149 ~ 26491161 (+) True G54711
TU68374 lncRNA upstream 157874 26407537 ~ 26407814 (+) True G54705
TU68264 lncRNA upstream 1044374 25521019 ~ 25521314 (+) True G54609
TU68263 lncRNA upstream 1047779 25516373 ~ 25517909 (+) True G54608
TU68461 lncRNA downstream 75040 26650482 ~ 26660346 (+) True G54777
TU68501 lncRNA downstream 212382 26787824 ~ 26792401 (+) False G54806
TU68505 lncRNA downstream 216131 26791573 ~ 26792401 (+) False G54806
TU68507 lncRNA downstream 218095 26793537 ~ 26796768 (+) True AMCG00009129
TU68500 lncRNA downstream 235209 26810651 ~ 26814492 (+) True G54806
AMCG00009116 mRNA upstream 27446 26532448 ~ 26538242 (+) True AMCG00009116
AMCG00009115 mRNA upstream 37197 26521864 ~ 26528491 (+) True AMCG00009115
AMCG00009117 mRNA upstream 56049 26497852 ~ 26509639 (+) True AMCG00009117
AMCG00009110 mRNA upstream 849640 25693486 ~ 25716048 (+) True AMCG00009110
AMCG00009109 mRNA upstream 891676 25667520 ~ 25674012 (+) True AMCG00009109
AMCG00009122 mRNA downstream 61045 26636487 ~ 26643471 (+) True AMCG00009122
AMCG00009128 mRNA downstream 207095 26782537 ~ 26785790 (+) True AMCG00009128
AMCG00009129 mRNA downstream 218748 26794190 ~ 26796767 (+) False AMCG00009129
AMCG00009138 mRNA downstream 226032 26801474 ~ 26801849 (+) True AMCG00009138
AMCG00009130 mRNA downstream 254757 26830199 ~ 26836417 (+) True AMCG00009130
TU68288 other upstream 978078 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 1647825 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 1749154 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 2589782 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5271787 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 1038141 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 2191012 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 2353450 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2528198 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2528198 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031286 False 2569 mRNA 0.46 14 NC_007113.7 36616830 ~ 36636751 (+)
grasscarp (Ctenopharyngodon idella) CI01000004_14877615_14885956.mRNA True 2255 mRNA 0.47 13 CI01000004 14877460 ~ 14886499 (+)