RNA id: AMCG00010131


Basic Information

Item Value
RNA id AMCG00010131
length 5764
RNA type mRNA
GC content 0.53
exon number 30
gene id AMCG00010131
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 15676288 ~ 15695826 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACTTCACCGAGAACAGCATGGCGGCGAGCCTAACGTGGTGAAAAGTGGGAAACTTGGAAATCAGTGAAGAGGTCGCCAGGCTAATGGATGACATTTGGACAGTATAACCCCTGAAGTAGGATGATGCGCAGATCAAGGATAAGTGTGAGGCCCTTTGTCCGGCCTGGAGGAAGAGGCCCCCCAGCTCCGTCTCAGGATCAGAAGCTCTCTGAGGATGCCGGCGCATCATGGAAAGCTGGGGAGGACAACCAGGCTGCTGAGCAGGAGGTGGCGGGTGAAGGAGCCGCCGTAACTCAGCCTATAGTTCCAGCAGGCAGCTCAGATGAGGCAGCACTGGACGCTGCCCAACAGAACGTGCCGGTTAATCCAGCTGAAAAGAGCCAAGATGCTGGAGGCGCCGGCAGCAGTAATCCCTCGGCCCCCGCTCTACAGAGAAGAAAACGCTTCTCCGCAATGCCCAACCTGGCCAAGCCGAGGCCTACTCCCGCACCTGCACGGCCTCCAGCCAGAGCCACCCCTAGGTCTCCCCCTGCCAAGCAAGTTGCGTCACCTGTTATCGAGAATAACGTAACAACCCCAGAGGACGGCACACAGACGGACGATGCCCCCCACGCTGTCCTCAGGTCACCCAGCCGGAGAAGACCCTCTGGAGGTAGGCAGGCGAAGGTGGCGGAGAAATCTGGACACCTCAAAGATGACACTGCTGTCACTTCAAATCAACACCCGCCTGCTGGTCAGGTGAAAAAAGCAGCTGTTGAAAATGCACAGAAGCCTAGTCCGTCCCCAGTCAAGATGAAGGACTCGCAAGCAAGCACGTCTCAAGGCAGGGCTCGGCTTGTCTCCGGGTCCTCAGCCACTAATGGAAAAGACACGAAAGGGAGCACTGTGTCATCAAAGCAGCTGCCCTCCCAACCGTCTTTGCCTCTGAATAAGCTGAGCATTTCTGAAGACCGGGAGAGAATCCTTAAAGCACGCAAGCTGAGAGAGCTTCTTAAGCAGGAAATCAGAAATGAAAAGAGACTTAAGAAGGGGAAGACATCTATGTTAGAGTACACTGTCCCTCAGGACCGGAGCAAGATGGTTATGAGAGACTTCATATACTATTTGCCAGAGAGCAATCCAATGAAGCCAGTGAACGAGGAgatggatgatgatgatgatgataataatgatgaacCGGTCCAAGATGACCAGCTTGTCGTGCCCAGAGTGAAAGTGGCTGAGGATGGCACACTTATCATTGACGAAGAAAGTTTAACTGTCGAGGTTTTGAGAGTCAAAGGCCCCAATGTGGTAGAGGAAAACGACCCCATCTTTGAGCGCGGTTCTACTACAACGTACTCTAGCTTTCGGAAAGCCAACTACACCAAGCCGTGGTCAAATAAAGAGACTGACATGTTCTTCCTGGCGATAAGCATGGTGGGCACAGACTTCTCCATGATTGGTCAGTTGTTTCCACACAGGGCCAGGATTGAGATCAAGAACAAATTCAAGAAAGAGGAGAAGACAAATTCCTGGAGGATAGATAAAGCGTTCAAAGAGAAAAAGCCCATCGATATCGAGTTTTTCAGCGAACTGCTTGAGAGGATCCGAGCTGACGACGAGAGGAAAAAGAACAAATCGAAAACCAAGAGTGCGAGGCAGAGGAAGCCAGCAAAACCAAGAACCAAGCGAAAAGAAAACAAGGGTGATCCGGAGGAGGCCCCCGAAGGCAGTGTCGCCCTGGTGGGGGCGGACAGCGACGGTGGGGAGGGTGACTCGGAGACAGCTGAGAAGGAGAATGAGGAGACTTTCAATGTGAACGACTGCCAGGAGGCAGAAGCCAGTCCGGATGCTCCCCCGGCCAAAAAGAAACGCAAACGCAAGAAGGAGGCCGAAGGGGCTGAGGAGGCCTGTCTAGAAAAGCCAGGGGACGacaagaaaagacagaaaaaaaggatgaaaaaaacaCTCGAAGAAGGGCCAGCAGATGATGCCATTGTTGGTGAGAAGTCTGACGATGCTCAATCTAATGCCCAGCCTTCTGCCGAGGATGCTGACGGGTCACAGGAGACAGAAATGCCAgggaaggagagaaaggggCCTGGAGGCAAACCAGCTGGGCTTGGCAGAGGCCGCCTCCAAAAACCACAGCCCAACCTGGGGAAGAGAAGGGGCAAGAAGGCCCAGGAGGCTGCGGAGAAACCCGGGGCTGAGGCCAGCAAAGAAACTGAAGACCAGACTACTGATTGTGTGGCTCCTTCCTTCGTGGAAAGGAAGAGGAGCTCAAAGAGGGACAAGAGACGCGCCAGGGTGTTGTCATCGGACTGTGAGAgccagggagaggaggaggaggaggaggaagcggATCTCACTGCCTTCTCCAAGCACCTGCAACAACCTGAAGACGATGACGATGGTGGAGACGACTCCATTGAGGCCTCGCCCTTTGCCTCCCTGCCACAACCCCAGGAGGACGCCCCGTCCATTCGCAGAGGTGCCAAGAAACCCAAACCCAACACGAGCTGCAACCAGAAGGAGCGCAGGGCGGGGAAGGCAAAACTGGTGATGCTGAGGGCGTCGGTTGAGAACGAGGATGACAACGAGGAGGAGGCGGACGAGGGGAGGACCGAGGAGGACTACTGCTATCCCACAAACCCCGAGGAGTTGAACCAGGCCCCTGCGTTTGTGCCCGTCAGCCTGCGTTCGCCCGTCGCCATTCCTGTGGAGGTGGAAGAGACCATGGAGGAGCTTGAGATctcacacattgacacacactgcactagCGAGTCTGAGCACACAATCTAttctcagtcagtgtgtgccCTGGGCCCCGGCTCACAAGAGGAAGGGGTAGTGGCCACAGAAAATCAGTTGGACTTATTGGTTGATGTGATTCACTTTATCTCCCAGGAATGCATGACTGAAATCTCAGAATCTGATACAGAAATCAACACAGAGGCGGCCCAGACTCTGCTGACCATAAGACACCCAGAGTTTCTATCCCCGGTGACGGGAGGACCAAGCTCCGAACAAGTCATTTCCGAGGAGCCTTCCAGCCAGCAGCAGGTCGTCATTGAGGAGCTGGACTCGGAGCCAGCTGACCAATCACAATGTCTCTCTGAAGCCCCTCAAGCAATGACTTGTGACTCCCCTGTGGCTGTAACCTGTACAGACATTACTGAGGAGCCAGAGATGGCCTCCCAAGCAGCCAGTTGTGAGACACTGAGCCCTGCGGAAGAACCCCAAACCCCAAAGAGAGAATCGACAAACGATGTCTGTCCAGACGTGCCTGTGACTGAGCAAAAGTCTTCTGAAGAGGAGAAGCCTGTCTTAGACAGTGGGAAAGAGAAAGACGTCCCAGGAAAACCCAGAGATAAACCGGAATTGTGTGAAGACGTGCAAAAACTCGATGACACCCCCAGTGTCTCCGAGGCTCCTGAGGTCAGTGTAGACGTGAGTGCTGCCGTTCCTGACTCCCCAGCCCTGCCTGGGTCTTGCTGCCGGAGGAGCAGGTTCTCAAAAGCCATCCCCAACCTGGGCAGGACAGCCAGAGACCCTCTGCCACGGCCGGCCCCTATCGGAGCCACACCACCCAGCTCTGttgATCAAACTGGAACTTCTTCAGACCAGGTTTCCAGCAGGGAGAAGAGAACTGCAAACAGCAATGACCTTGTGGCACAAGAAGGAATCGTGCACAAGACAGTGTGCTCAACTGTACAGAAGGAGGAAGCCAACATATCTGTAGAGCAAAATCAGTCCACAGCAGCAACTGACACTGAATCCAGCGACAGTGGAGCCTGCAGTGCTGTCAGGGAGAGTGGTCTTGCAAAGGGGTCTGCAGACACAGATAGTGAGCACACAGGGCATAGCGTGATTGGCACTGATGACGCACAGGTGGAGGTGACGTGCATCCAGACCGATGAGAGCCTTAATGTCCCGATTACAACAGAAGTCACACAAgGGGCCTTGGAGACGGATGAATCTGCCCAGCAAGAGCCAACGTTTATACTGACCTTGTTTGAAATCCCGCCCTGTGATCTGAACACATACCAGGATGTGTCTGGCGCCATGACCCCAGCCTCCACTGACTTCCCTCCCCCTGTGCTGGTAGAGTCCCCTCCTGCAGTGCTACTCGGAGCATCACAGAGGTCCAGTTGTGCTCCAGTGTCAGTAGAAACCGAGTTGGGCGCACAGACCGTGGGAGGGGAAAGTGGGGGACGGTCTGTGCATGTGGATGACTGGACTGCGTCAAAGaaactgaaccttctcacctCATCACCAGGACAGGAAGCCACAGCCTCTTACTGTGCTGGCCCTGAAGCTACAGGGCAGCCACCACTAACAGCTCCTACGTCTTCTGTGACGCACGGATTGGAGTGTCCAGCAGACTCATGCGATGAAGACCCTGTGAGCCTGATTCTGGAACCTGTTGTGGAATCGGACGCAGCTGCCTATGCAGAGACCGAGGGGACCAGTGAAGACGATGCCAGATCTCGAGGGAAGAGGAAGCTTCCCATGGGGACACGAAGAGGAAAGCTGAAGGTGAAACCTAACACCTCGAACAGGAAAGCTGCCGTGTCCTCAAAGGGAGTCCTGGGAATCTCGAAACCTTTGCCAACCCAGGATGAAACCCCAGGCCTGTCCCGGGTGGTGCGTGGGGGACCAGTACCAGCTCCTAGCGTGAGTCCGGAGAGCTCTGGGGAGTCAGAGGTCCCCCATGCAGAGGGTCTTTCGCCGTGTACAATGAACAATGAAGAGCTTTCACAGCAGGTCAGCACGCCAGCAGGAGAAGGCATAGACAGCGAGAGCACAGGGAGTGATCTGAGCGCCAGCCCAAGGGTTGCCCCTCCGGCTTCCACTACCTCATTAGTAAGgCCTGGAAGGAAGCCCAGAGGATTTTTATCTttgtttgcaaagaaaaacaccCCTGCAAGTCCTGCTCCCTCGAAGACAACTAGGGCTGCTCCACAGAGACCTCAGTTTAATGCATCTAGGCTTGAGAGGAAAAGGACTACAGCTACTGCCGCCATAGATGCATCCTCCGATTCCTCCATTGTTAATTCTCCTCCAGCGAAACACAGGCCTAGTACATCTCAGAGCGGAGCCACATCACAGACAATTTCCATCTCTGCCACTGAAAGCAAAACCTCCGAAACTCCAAAACAAGAGGTCTTGTGTGCCACGAACTCTGAGAATGACGAAGGACCCACGAAAGTCTCTGAGTATTTCTTTAGTGACATCTTCACAGAGGTGGATGAGCCAGACTGATGATGGCAGCTGACAGAGATGTTTCTGACTCTGATAAGCAGAAGATGCAATTTGTGTAAAATTATCTTTATTTCAATAGACCTCCTTTAACTATTCAGCATACCACTGCATCAGATCTGCAGCTGAGCTGGCCGTGtccttattatttttacagatgcAAATACTGGGATCTATTAGGTGATTAGGCACTGAAAGACACTTTTCTTCCGCTGGGAGGAAACATTCAGATCTTTGGCTATAATTACACCCATCATATCACAATGGTTCTTCTAATTGAGTGAGAAGCTGTTAGTCATCAGTAATATTACCTTTTGAAGGCAATAACAGGAATTCCTCAAATTCTGTTCTATATCCAGATTTgctagaaaatgaaaaagtcacCCTTATTGTGTATTAGCACTGtaatcacaatgtttttttaatttattttaatctggaCATTTTTTTCATCCAAAATGTTGATATTTCTTGGCAATCCATTGAACACTTTCATAATCTGCATTTGATGGgg

Function

GO: NA

KEGG:

id description
K15198 BDP1, TFC5; transcription factor TFIIIB component B''

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97442 lncRNA downstream 33393 15642157 ~ 15642895 (-) True G78099
TU97440 lncRNA downstream 43080 15631648 ~ 15633208 (-) True G78097
TU97345 lncRNA downstream 492894 15183112 ~ 15183394 (-) True G78014
TU97320 lncRNA downstream 598443 15077590 ~ 15077845 (-) True G77992
TU97316 lncRNA downstream 601834 15039560 ~ 15074454 (-) True G77988
TU97501 lncRNA upstream 92937 15788763 ~ 15790996 (-) True G78144
TU97549 lncRNA upstream 336263 16032089 ~ 16032382 (-) True G78190
TU97592 lncRNA upstream 513493 16209319 ~ 16213933 (-) True AMCG00010142
TU97597 lncRNA upstream 536580 16232406 ~ 16236788 (-) True G78226
TU97764 lncRNA upstream 1492193 17188019 ~ 17188849 (-) True G78365
AMCG00010133 mRNA downstream 2288 15655792 ~ 15674000 (-) True AMCG00010133
AMCG00010121 mRNA downstream 20923 15654540 ~ 15655365 (-) True AMCG00010121
AMCG00010123 mRNA downstream 25504 15641043 ~ 15650784 (-) True AMCG00010123
AMCG00010122 mRNA downstream 69498 15603759 ~ 15606790 (-) True AMCG00010122
AMCG00010120 mRNA downstream 100499 15560105 ~ 15575789 (-) True AMCG00010120
AMCG00010132 mRNA upstream 24349 15720175 ~ 15735710 (-) True AMCG00010132
AMCG00010129 mRNA upstream 95292 15791118 ~ 15797078 (-) True AMCG00010129
AMCG00010130 mRNA upstream 224714 15920540 ~ 15929582 (-) True AMCG00010130
AMCG00010137 mRNA upstream 362687 16058513 ~ 16059187 (-) True AMCG00010137
AMCG00010142 mRNA upstream 517752 16213578 ~ 16224041 (-) False AMCG00010142
TU96773 other downstream 3947123 11728503 ~ 11729165 (-) True G77544
TU95829 other downstream 8613467 7057805 ~ 7062821 (-) True G76762
TU95819 other downstream 8739220 6936718 ~ 6937068 (-) True G76752
TU95738 other downstream 9007454 6666606 ~ 6668834 (-) False G76684
TU95471 other downstream 9775304 5894675 ~ 5900984 (-) True G76463
TU98065 other upstream 2145166 17840992 ~ 17844389 (-) False AMCG00010188
TU98067 other upstream 2157041 17852867 ~ 17855730 (-) False AMCG00010190
TU98072 other upstream 2249409 17945235 ~ 17945761 (-) True G78610
TU98705 other upstream 5235345 20931171 ~ 20941393 (-) True G79147
TU98765 other upstream 5380115 21075941 ~ 21081825 (-) False AMCG00010247

Expression Profile