RNA id: AMCG00010133


Basic Information

Item Value
RNA id AMCG00010133
length 2846
RNA type mRNA
GC content 0.44
exon number 16
gene id AMCG00010133
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 15655792 ~ 15674000 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCAGCGCTGAGCGAATGATACAAACTCCACACAAACGCACAACGGTGAcagatttattgatttgtaCGAGAGCACGCATATGCACACATTACAAGCACGATGCTGCAAACACTCCGGCCAGCGCTGTGTCTGCTCCGATGTACGGGGAGGGTGACGGGAGCTTTCACAAGGCTATACCATGGGGACAAAGTGGCGACCATTGGTGCGCAGCCTGACACAAGCAGTCCTCTCTATCAGGAAAACTATGAACGAATGCAGGCCCTTATTAAGGAGCTGAAGGAGCGAACAGAAAAGGTTAAAGATGGGGGCGGAGAAAAGGCAAGGAAGCTGCACACCTCCAGAGGGAAGATGTTGCCACGAGAACGCATTGACAGACTGCTGGACCCGGGGGTAGAGTGTGTCATAGTGGCAAATGATGCAACCGTTAAAGGGGGCACTTATTACCCCATCACAGTAAAGAAGCATCTTCGTGCCCAAGAAATTGCCCAACAGAATCATCTGCCCTGTATATATTTAGTGGATTCAGGAGGGGCGAACTTGCCACGACAGGCCGACGTATTCCCGGACCGGGACCACTTTGGGCGCATCTTCTACAACCAGGCACGGCTCTCATCGGAAGGGATCTCACAGATAGCTGTGGTCATGGGTTCCTGTACAGCAGGTGGAGCATATGTACCTGCCATGGCTGATGAAAGTATTATAGTGAAGAAACAAGGGACCATATTCCTTGGAGGTCCCCCACTGGTGAAAGCTGCTACAGGTGAAGAAGTTTCTGCTGAAGATTTGGGAGGTGCTGACCTCCACTGCAGAAAGTCTGGCGTCACTGACCATTATGCCCTAGATGACGAGCACGCGCTCCATTTGGCTCGGAAGTCTGTCAGAAGTCTGAATTACAAGAAAAAGCTGGATGTGACCGTCGAGCCCCCGGAGGACCCCAAGTTTCCGGCAGATGAATTATACGGCATTGTTGGCGACAACCTGAAAAGGACCTTTGATGTCAGAGAGGTAATTGCAAGAATAGTGGATGGAAGTTTCTCCAGAATATTTGGATACCCTGTGGGCATCATTGGGAACAATGGAGTCCTGTTTTCAGAATCTGCAAAAAAAGGAACACATTTCATAGAGTTATGCTGCCAGCGGAATATCCCACTCATTTTCCTCCAAAACATCACAGGGTTCATGGTTGGTAGAGAGTATGAAGCTGGTGGAATAGCCAAGGATGGTGCCAAGATGGTAACCGCAGTGTCCTGTGCCAACGTGCCTAAGATCACGGTCATTATTGGAGGCTCTTACGGTGCTGGGAACTATGGCATGTGTGGGCGGGCCTACAGCCCAAGATTCCTGTACATGTGGCCTAATTCTCGGATATCTGTGATGGGGGGAGAGCAGGCTGCTATGGTTCTGGCGACCATCACAAAAGACCAAAAAGCTCGGGAGGGAAAGCAGTTTTCTGCCGAGGAGGAAGCTGCTTTGAAGGAACCCATAATTAGACGGTTTGAAGAAGAAGGCAGCCCTTACTACTCCAGTGCCAGGCTGTGGGATGATGGGATTATTGACCCGGCGGACACTAGACTGGTGCTGGGTCTGAGTCTCAGTGCCGCCCTCAACGCCCCCACCAAGAAAACGCAGTTTGGGGTTTTCAGAATGTGATCTGTGAACACGGTGCATTGGCTGCGGAAAATCCACTGACATGAAATAAAGGATTAATTGAATTCTAGTGCAGAACacaaatactgtatacatactGTGGTGTGCCTTTTTTAACACTGGTTTACATGGTTTATCaaaatgattttgaatttgTCAGGTCCATATTAAATCAGTGTAACAGATGCATCTTCCCAAATGTTTGACACCAGGCTGCGCTATTGCCACAAGAGCTGGTGGTGAGAACAGTGAAAAGCTTAACAAGGCAAGATACCACTCAGATACTTTAAGTAAGTGGTAGAGTCTAGTCACAAAAAGATGGAATCTTCAAGGAGTGTGAATCAAAGCTTAAGAAGCTTGTTTGGGGGGATTTTGAAGTACAGATCTAGCAAGAGACGTCATGCATAGAGGaaggaatgtgttttttaattttaaaatagttgtGGGGAAATTATCTGTGGGTTATCTGGAGTCAGACAAACTTTGCACCACACAGGGAATGATTGTTCTTTTTTGGACACTTGACCCATCATATAATGGCCCAAGCAGGATCTATAACTTGGGCATCCTTTGGAGAACTCGGTCGCCATATACTAACTTCTTGTAACTTTCTCCACTTGACTTTCTCACCCTTCCCCAAATCTCATTAAATGTTTCTCTGTGTTCAGTCACTGAGCAATGTAATTTCAACCCTTTAGTAGACACTGAGGTGATGCAGTCATTCCAAAAcgttgaaaaaataataataaacaggttagaaaatctgtcttttctttcctttgattTTTCATCATTTAAACCTCAGAATTGCATGCATCCCACCAGTAAGACTATAATGAAACCATAAAAGCTTTAGATCTCGTTTTTCATAACTTAAAAGGTAGTCAAAGTTACATATTGCCTACTATATGCCCCTtgttaatgtatattaatttaagcattacaaatattttaatcagtgTAATAACAGTACTGATCTTGTTAAATGCTTGTGGAAAGGAtcttatttgaaattaatgataatatatattaaaatattgtccaAATATGTGTACAGCCATTGCAAatgacagagaaaaacattattaaaataactccCAGTTCTTTTAAAACGGAAAAATTGTGGCATCTGATATTCTGCAAAATGTGtatgaattgatttatttatttttgctatggAATAAATAGTTCTGAAAC

Function

GO:

id name namespace
GO:0016874 ligase activity molecular_function

KEGG:

id description
K01969 E6.4.1.4B; 3-methylcrotonyl-CoA carboxylase beta subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97442 lncRNA downstream 12897 15642157 ~ 15642895 (-) True G78099
TU97440 lncRNA downstream 22584 15631648 ~ 15633208 (-) True G78097
TU97345 lncRNA downstream 472398 15183112 ~ 15183394 (-) True G78014
TU97320 lncRNA downstream 577947 15077590 ~ 15077845 (-) True G77992
TU97316 lncRNA downstream 581338 15039560 ~ 15074454 (-) True G77988
TU97501 lncRNA upstream 114763 15788763 ~ 15790996 (-) True G78144
TU97549 lncRNA upstream 358089 16032089 ~ 16032382 (-) True G78190
TU97592 lncRNA upstream 535319 16209319 ~ 16213933 (-) True AMCG00010142
TU97597 lncRNA upstream 558406 16232406 ~ 16236788 (-) True G78226
TU97764 lncRNA upstream 1514019 17188019 ~ 17188849 (-) True G78365
AMCG00010121 mRNA downstream 427 15654540 ~ 15655365 (-) True AMCG00010121
AMCG00010123 mRNA downstream 5008 15641043 ~ 15650784 (-) True AMCG00010123
AMCG00010122 mRNA downstream 49002 15603759 ~ 15606790 (-) True AMCG00010122
AMCG00010120 mRNA downstream 80003 15560105 ~ 15575789 (-) True AMCG00010120
AMCG00010118 mRNA downstream 136909 15517969 ~ 15518883 (-) True AMCG00010118
AMCG00010131 mRNA upstream 2288 15676288 ~ 15695826 (-) True AMCG00010131
AMCG00010132 mRNA upstream 46175 15720175 ~ 15735710 (-) True AMCG00010132
AMCG00010129 mRNA upstream 117118 15791118 ~ 15797078 (-) True AMCG00010129
AMCG00010130 mRNA upstream 246540 15920540 ~ 15929582 (-) True AMCG00010130
AMCG00010137 mRNA upstream 384513 16058513 ~ 16059187 (-) True AMCG00010137
TU96773 other downstream 3926627 11728503 ~ 11729165 (-) True G77544
TU95829 other downstream 8592971 7057805 ~ 7062821 (-) True G76762
TU95819 other downstream 8718724 6936718 ~ 6937068 (-) True G76752
TU95738 other downstream 8986958 6666606 ~ 6668834 (-) False G76684
TU95471 other downstream 9754808 5894675 ~ 5900984 (-) True G76463
TU98065 other upstream 2166992 17840992 ~ 17844389 (-) False AMCG00010188
TU98067 other upstream 2178867 17852867 ~ 17855730 (-) False AMCG00010190
TU98072 other upstream 2271235 17945235 ~ 17945761 (-) True G78610
TU98705 other upstream 5257171 20931171 ~ 20941393 (-) True G79147
TU98765 other upstream 5401941 21075941 ~ 21081825 (-) False AMCG00010247

Expression Profile