RNA id: AMCG00010492


Basic Information

Item Value
RNA id AMCG00010492
length 1089
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00010492
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 32397164 ~ 32469060 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGCCGTCGAGCTCACACACTGTGCCGAGACCGAGCGTGGAAACCCCGGGCAGTGACGTCACGCCGGGGCTGCTCGCTCACACTAACAGACGGCCGGGCTGGGGGGAGAAAGGAGAGGCCGCATGGAGGAcggggagaacAATCATTCTTATTCAACTCTGGCATGTCAAGTCACTCTTCGTCTTCATTGTCATCGTCATTTTTGTCAGAGCTTCTGTCTCTGACCGGGGCCCTCAGGTGGGAGCTTTAGGAGACACAAAATTGCCCCCACCTGGGTCCAGGGACTGCCTTCACTCAGACGCCACCCTCACACAGCCCGGACAGAGCGGACTGGGGGGTCGGGGCTTCTCTGCAATTGGAAGCTTGCTGGACAGGCTCTGCCCTAGCCGCCTGTGGACCAGTCTCTTCACCACAGCCCTGAGCAGCTGCGAGGAGGGCACAGTGATCGCGCTGCGGCTGGCCAGCACAGGCGGAGTTGAACCTGTCCAGGACTATGTCAACCACGGCACCCACCAGCAGCCTGTTCCGGGGGTTCTGAGGAAAGCTTCCACTGAACGGGCAGCAGCTGCCTCCTCCTGCGACCAAGTCTCAGGGGTCTTCAGGGTTTCCACCGCAACCTGCACAGCGGCCCACACCACACCCTGCGCCTCGCTGAGCCAGGCCTCATTGAACAGTGCCCCGCTGCGCTCCTGCTGCTCCTGGGCATGCAGCTGCCTGATATGCCACGAACAACTCCTGCACCCTGAGCATCACCGCCTCCGCTATGCTCTCCACCATCTGGAGCAGGGTCTCACTGTGCTCCTGCCCCTCCTGGGCTCGGAGCCGCCAATGGCCTCCTGCGCACTGAGCATCATGCCCTCCATGATGCCCTGTAGCATCCGGAAAAGGGCCTCAATGCTCTCCTGCTGTGCCTGCATGACCCTGCCTGCGCTCTCGCTGTTCCTGGGCCTGCAGCCGCATGATCTCTGCCCGATAGCGTCCCGCGGACTGGGCATCATCCCCTTCGACTTGCCGAGCCTGCCTGAGCTCATGCTCTTCCTGGGCCTGCAGCCCTCTGATGTTGCCTACTCGTTTCCCGGGTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101012 lncRNA downstream 1320003 31072452 ~ 31077161 (-) True AMCG00010478
TU100910 lncRNA downstream 1659770 30734784 ~ 30737394 (-) True G80901
TU100866 lncRNA downstream 1792414 30604514 ~ 30604750 (-) True G80862
TU100832 lncRNA downstream 1876918 30510970 ~ 30520246 (-) False AMCG00010458
TU100771 lncRNA downstream 2011917 30346465 ~ 30385247 (-) True G80786
TU101227 lncRNA upstream 56618 32525678 ~ 32530211 (-) True G81138
TU101259 lncRNA upstream 90951 32560011 ~ 32591606 (-) True G81157
TU101380 lncRNA upstream 685092 33154152 ~ 33155346 (-) True G81258
TU101413 lncRNA upstream 1000917 33469977 ~ 33517151 (-) True G81287
TU101484 lncRNA upstream 1394837 33863897 ~ 33864171 (-) True G81340
AMCG00010491 mRNA downstream 83264 32311451 ~ 32313900 (-) True AMCG00010491
AMCG00010490 mRNA downstream 336007 32005161 ~ 32061157 (-) True AMCG00010490
AMCG00010487 mRNA downstream 399470 31954370 ~ 31997694 (-) False AMCG00010487
AMCG00010488 mRNA downstream 448891 31947650 ~ 31948273 (-) True AMCG00010488
AMCG00010489 mRNA downstream 449783 31486416 ~ 31947381 (-) True AMCG00010489
AMCG00010498 mRNA upstream 27374 32496434 ~ 32508301 (-) True AMCG00010498
AMCG00010499 mRNA upstream 65314 32534374 ~ 32578778 (-) True AMCG00010499
AMCG00010500 mRNA upstream 170347 32639407 ~ 32645904 (-) True AMCG00010500
AMCG00010504 mRNA upstream 434547 32903607 ~ 32936398 (-) True AMCG00010504
AMCG00010506 mRNA upstream 468650 32937710 ~ 32949637 (-) True AMCG00010506
TU101107 other downstream 425409 31954384 ~ 31971755 (-) True AMCG00010487
TU99963 other downstream 6017417 26372742 ~ 26379747 (-) True AMCG00010364
TU99273 other downstream 9032217 23359643 ~ 23364947 (-) True G79601
TU99198 other downstream 9311179 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 10415190 21964529 ~ 21981974 (-) True AMCG00010271
TU101338 other upstream 526390 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 3245891 35714951 ~ 35716672 (-) True G81716
TU102168 other upstream 4208637 36677697 ~ 36683818 (-) True AMCG00010602
TU102417 other upstream 4936820 37405880 ~ 37408100 (-) True AMCG00010623
TU102742 other upstream 5988714 38457774 ~ 38460711 (-) False AMCG00010664

Expression Profile