RNA id: AMCG00010506


Basic Information

Item Value
RNA id AMCG00010506
length 2057
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00010506
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 32937710 ~ 32949637 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGGGTGGGCAGCTGGCATTTATTTACGCGGAAGTGACGTTCACGGAAGTGTTAGAGGCACAAAGATGGCGGAAGACGAGAATCCGCTGGAAGAATTTGAGCAAATCGACTTTCTCAAAGACCGGCATGTTAAATTTTTTCAGAGATGCTTACAGGTCTTACCGGAGAGATACTCCTCACTGGAAACCAGCAGGTTGACTATTGTGTTTTTTGCACTTTCTGGCCTGGATGTACTCGATTCCTTGGATGTTGTGGATAAGGCTAGCTTAATAGAATGGGTCTATTCATTACAAGTCCTTCCCACTGAAGACAAATCAAATCTGGGACGTTGTGGATTTCGAGGGTCTTCACATCTGGGGGTTCCGTACAATCCATCCAAgGGCCCTGGCACAGATCATCCATTTGACAGTGGCCATGTTGCGATGACCTACACAGGACTTGCCTGCCTGATCATCCTGGGAGATGATCTGAGCAGAGTGAATAAGGAGGCCTGTCTGGTGGGCCTGAAAGCGTTGCAGTTGAAGGATGGCAGcttCTATGCTGTTCCTGAAGGAAGTGAAAATGACATGAGGTTTGTGTACTGCGCTGCTTGTATTTGCTACATGCTTAATGACTGGTCTGGCATGGACATCAAGAAAGCCATAGATTACATCAGAAGAAGTATGctCCTAGAGGTTTTCCAGTATACAAACTTTGAAAAGAACCGCAACTACATCTTGTCAACTCAGGATCGTCTAGTTGGGGGTTTTGCTAAATGGCCCGACAGCCACCCAGATGCGCTGCATGCCTACTTCGGGATCTGTGGTCTGTCTCTGATAGGTGAATCCAACCTTCGCAAAGTGCATCCCGCTCTGAATGTGAGCGTCCGGGCTTTCGAGTATCTGCAGCACCTGCATCAGACATGGAGAGAACagagcagcagtagcagcagcagcccctgTGCGGAGTCTCTGCCTGTCTGCACATGACAGCCCTTTCACAAACTACTCCATACTCGCATAGAAAACGAGCAAGAATTTAAAAAGCCATGTGCCGTTCACCAGTGCTGGATTCTCATGTACCAAATCGACTACTGTGAATAACGTTAGCAGTATCTGGAGTGTTAGTGGGTAGCATGTCAAAGGGTTTCTTGTGACTGAACGTCAGGGAGGGATAAATAAGTAATCGAGTCGGTCTTCAATTATTGAGGGCAAATTGAATGAATGGGATTTCATTGACTTGGCAAATgagcagtttttgttttttaaggtttcTCGGGAGGCTTattctttaaattttttaatttatcaaatTCTGATCCATAAATGAATGCTAATCGGGGTTTCTGGCACCTCGAATCTCAGTAATGCTGACCGTTTTATTTGAGTCAATTTTCAGACTTTCTgccttcattcattttttttttcttttgttacaaatgttgctgttaaaaaatgttttgcttgaCCATTTTACCTTCTTCACAATGGGCAAGAGAGGAGAAAACCTGATGGTGTTATTCCTCTCTAAAGTATTAACCTTTTAAAGTTTGTCAGTATTGTTTATAGAGGAAACTGCTGTTGCCACAAGGCTCTTGAATTGGTATCGGACCAGCCACCACTTGCCCTGGTAGCATACACTCCTTCACAGAGACTTTCTTTAGATGTAGCTGCACCTATAGTAGTTCTTATGTTATCACAGCccttctaaaatacaaatataaaagctAGTTTTCTGACCAGCCATACTGCACTGTGTGCCTCGGACAGCAGAATCTAAGTGCATGCTACCCAAAGTACACCGCCAAGATTAGTCTGTATTGCTGATGTTTCATGAGACACATGAATGTTTGCTCTAACTAGTGGTATGTATAACAAGCACTGTTTGACTGAATGACACCTACTCAATGTCAATACTTCAATGTAAAGTACTTTATACTAATTTTCTAAATGAGTTTTTCAATATTctgtttatagaataaaaactCTAGCTGTAAACAACATggtttattgttaatttatggCATGCAGTGTGCATATGAATGTTGATTTTTGCTCagattaatgtgtgtgtgtg

Function

GO: NA

KEGG:

id description
K11713 PGTB1; geranylgeranyl transferase type-1 subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101259 lncRNA downstream 346104 32560011 ~ 32591606 (-) True G81157
TU101227 lncRNA downstream 407499 32525678 ~ 32530211 (-) True G81138
TU101190 lncRNA downstream 469454 32467875 ~ 32468256 (-) True G81116
TU101012 lncRNA downstream 1860549 31072452 ~ 31077161 (-) True AMCG00010478
TU100910 lncRNA downstream 2200316 30734784 ~ 30737394 (-) True G80901
TU101380 lncRNA upstream 204515 33154152 ~ 33155346 (-) True G81258
TU101413 lncRNA upstream 520340 33469977 ~ 33517151 (-) True G81287
TU101484 lncRNA upstream 914260 33863897 ~ 33864171 (-) True G81340
TU101543 lncRNA upstream 1148709 34098346 ~ 34104519 (-) True AMCG00010532
TU101651 lncRNA upstream 1722706 34672343 ~ 34673163 (-) True G81485
AMCG00010504 mRNA downstream 1312 32903607 ~ 32936398 (-) True AMCG00010504
AMCG00010500 mRNA downstream 291806 32639407 ~ 32645904 (-) True AMCG00010500
AMCG00010499 mRNA downstream 358932 32534374 ~ 32578778 (-) True AMCG00010499
AMCG00010498 mRNA downstream 429409 32496434 ~ 32508301 (-) True AMCG00010498
AMCG00010492 mRNA downstream 468650 32397164 ~ 32469060 (-) True AMCG00010492
AMCG00010505 mRNA upstream 1092 32950729 ~ 32954867 (-) True AMCG00010505
AMCG00010509 mRNA upstream 43650 32993287 ~ 32999252 (-) True AMCG00010509
AMCG00010507 mRNA upstream 59190 33008827 ~ 33011666 (-) True AMCG00010507
AMCG00010508 mRNA upstream 77330 33026967 ~ 33035940 (-) True AMCG00010508
AMCG00010514 mRNA upstream 217836 33167473 ~ 33206561 (-) True AMCG00010514
TU101107 other downstream 965955 31954384 ~ 31971755 (-) True AMCG00010487
TU99963 other downstream 6557963 26372742 ~ 26379747 (-) True AMCG00010364
TU99273 other downstream 9572763 23359643 ~ 23364947 (-) True G79601
TU99198 other downstream 9851725 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 10955736 21964529 ~ 21981974 (-) True AMCG00010271
TU101338 other upstream 45813 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 2765314 35714951 ~ 35716672 (-) True G81716
TU102168 other upstream 3728060 36677697 ~ 36683818 (-) True AMCG00010602
TU102417 other upstream 4456243 37405880 ~ 37408100 (-) True AMCG00010623
TU102742 other upstream 5508137 38457774 ~ 38460711 (-) False AMCG00010664

Expression Profile