RNA id: AMCG00010500


Basic Information

Item Value
RNA id AMCG00010500
length 516
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00010500
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 32639407 ~ 32645904 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTTTTCCCCCTTCCTACCCGTTGGCCTTCCTGCCTTCCCATCTCTTTAGGAATGACCTGCTGATGGTTTGCCGCCAGCTGAATATGGAGGACTCCGTGGCAGAGATCATGCACCAGCTTGGAGCCGACGAGCGGGGAAAGATCTCCTTTGAGGATTTCACACGATGCCGCATGCAGCTCGTGAGCGAGATCAGGAAAGAGGAAGGGGAGCTGTCGGTTAAATCGGATGACTCCTGCAAGAAGAAGTTAAGAGATCGCATCGCATCCTGGCCAACTAGCAGCGACAACAGTTTGGGTGCCTTGTCGGGGGCCCGGGAGAGCTGGGAATACGATTCGGGGGCTCGGGACCTGCAGAGCCCCGACCTTCAGCACCAGCCGCCCCTTCAGAAGCTGCTGGAGTATCGAGGAGGGACGCTGGAGCAGCAGGCCGCTCTGCACAAACTCCTGACACAGGCCCACTGCCTGAGCACCCCTGTGGGCGGGAACTACCTGGAGCTGGCCAATACGGTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101259 lncRNA downstream 47801 32560011 ~ 32591606 (-) True G81157
TU101227 lncRNA downstream 109196 32525678 ~ 32530211 (-) True G81138
TU101190 lncRNA downstream 171151 32467875 ~ 32468256 (-) True G81116
TU101012 lncRNA downstream 1562246 31072452 ~ 31077161 (-) True AMCG00010478
TU100910 lncRNA downstream 1902013 30734784 ~ 30737394 (-) True G80901
TU101380 lncRNA upstream 508248 33154152 ~ 33155346 (-) True G81258
TU101413 lncRNA upstream 824073 33469977 ~ 33517151 (-) True G81287
TU101484 lncRNA upstream 1217993 33863897 ~ 33864171 (-) True G81340
TU101543 lncRNA upstream 1452442 34098346 ~ 34104519 (-) True AMCG00010532
TU101651 lncRNA upstream 2026439 34672343 ~ 34673163 (-) True G81485
AMCG00010499 mRNA downstream 60629 32534374 ~ 32578778 (-) True AMCG00010499
AMCG00010498 mRNA downstream 131106 32496434 ~ 32508301 (-) True AMCG00010498
AMCG00010492 mRNA downstream 170347 32397164 ~ 32469060 (-) True AMCG00010492
AMCG00010491 mRNA downstream 325507 32311451 ~ 32313900 (-) True AMCG00010491
AMCG00010490 mRNA downstream 578250 32005161 ~ 32061157 (-) True AMCG00010490
AMCG00010504 mRNA upstream 257703 32903607 ~ 32936398 (-) True AMCG00010504
AMCG00010506 mRNA upstream 291806 32937710 ~ 32949637 (-) True AMCG00010506
AMCG00010505 mRNA upstream 304825 32950729 ~ 32954867 (-) True AMCG00010505
AMCG00010509 mRNA upstream 347383 32993287 ~ 32999252 (-) True AMCG00010509
AMCG00010507 mRNA upstream 362923 33008827 ~ 33011666 (-) True AMCG00010507
TU101107 other downstream 667652 31954384 ~ 31971755 (-) True AMCG00010487
TU99963 other downstream 6259660 26372742 ~ 26379747 (-) True AMCG00010364
TU99273 other downstream 9274460 23359643 ~ 23364947 (-) True G79601
TU99198 other downstream 9553422 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 10657433 21964529 ~ 21981974 (-) True AMCG00010271
TU101338 other upstream 349546 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 3069047 35714951 ~ 35716672 (-) True G81716
TU102168 other upstream 4031793 36677697 ~ 36683818 (-) True AMCG00010602
TU102417 other upstream 4759976 37405880 ~ 37408100 (-) True AMCG00010623
TU102742 other upstream 5811870 38457774 ~ 38460711 (-) False AMCG00010664

Expression Profile