RNA id: TU100011


Basic Information

Item Value
RNA id TU100011
length 301
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G80181
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 26626032 ~ 26626332 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTATAAACAGTGAAAGTGTCTTGATTTCCGCCTCTTGTCAATGAGTTTGTATCACTGTAGTAAAGCTGTCCCTGTCTCTTCGAGAGTAGGGCTTTTGTAAATCTccataacaaatacaataaacttgGGATCTCCTTCTGATGATCAAACACAACAGTACCCGCTTTGTATAAACGGTAAGAACGATAAATATAGGTATAAAACAGATATATTATGATCGTAACTAATACAACTACTATCAAGGGTAAAAGAAAACTTCCCATATTAGCTGATCTGTTTCTTACACAGCCACCTTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99982 lncRNA downstream 206110 26412218 ~ 26419922 (-) False AMCG00010371
TU99971 lncRNA downstream 214580 26409985 ~ 26411452 (-) True G80150
TU99969 lncRNA downstream 227674 26397739 ~ 26398358 (-) True G80148
TU99968 lncRNA downstream 228954 26396801 ~ 26397078 (-) True G80147
TU99964 lncRNA downstream 246285 26367932 ~ 26379747 (-) False AMCG00010364
TU100012 lncRNA upstream 3433 26629765 ~ 26630005 (-) True G80182
TU100013 lncRNA upstream 5447 26631779 ~ 26632088 (-) True G80183
TU100015 lncRNA upstream 9650 26635982 ~ 26639684 (-) True G80185
TU100051 lncRNA upstream 576699 27203031 ~ 27203394 (-) True G80218
TU100054 lncRNA upstream 597490 27223822 ~ 27224149 (-) True G80221
AMCG00010373 mRNA downstream 98663 26506281 ~ 26527369 (-) True AMCG00010373
AMCG00010370 mRNA downstream 181124 26428907 ~ 26444908 (-) True AMCG00010370
AMCG00010371 mRNA downstream 199374 26412210 ~ 26426658 (-) True AMCG00010371
AMCG00010364 mRNA downstream 250876 26373377 ~ 26375156 (-) False AMCG00010364
AMCG00010363 mRNA downstream 378524 26225287 ~ 26247508 (-) True AMCG00010363
AMCG00010375 mRNA upstream 133790 26760122 ~ 26778863 (-) True AMCG00010375
AMCG00010376 mRNA upstream 234220 26860552 ~ 26861050 (-) True AMCG00010376
AMCG00010387 mRNA upstream 1106811 27733143 ~ 27753037 (-) True AMCG00010387
AMCG00010389 mRNA upstream 1152568 27778900 ~ 27781304 (-) True AMCG00010389
AMCG00010388 mRNA upstream 1171995 27798327 ~ 27809635 (-) True AMCG00010388
TU99963 other downstream 246285 26372742 ~ 26379747 (-) True AMCG00010364
TU99273 other downstream 3261085 23359643 ~ 23364947 (-) True G79601
TU99198 other downstream 3540047 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 4644058 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 5544207 21075941 ~ 21081825 (-) False AMCG00010247
TU101107 other upstream 5328052 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 6369118 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 9088619 35714951 ~ 35716672 (-) True G81716
TU102168 other upstream 10051365 36677697 ~ 36683818 (-) True AMCG00010602
TU102417 other upstream 10779548 37405880 ~ 37408100 (-) True AMCG00010623

Expression Profile