RNA id: TCONS_00072805


Basic Information

Item Value
RNA id TCONS_00072805
length 3142
RNA type mRNA
GC content 0.42
exon number 13
gene id XLOC_036986
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 10770880 ~ 10780660 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTGAAGGCTGTCATTCTTATCGGAGGCCCCCAAAAAGGGACCCGCTTTCGGCCACTGTCTTTTGAAGTGCCCAAACCTCTGTTTCCAGTGGCCGGAGTGCCAATGCTGCAGCATCACATTGAGGCCTGCTCTAAGCTTCCAAATATGAAGGAGATCTTACTCATTGGCTTTTATCAGCCCAATGAAGAACTAAACAGATTTTTGTCATGTGCCCAACAAGATTTTAAAATATCAATAAGATATCTTCAGGAATATGCTGCTCTGGGAACTGGAGGAGGAATCTACCATTTCAGAGATCAGATCTTGTCTGGAGGTCCAGATGCATTTTTTGTCATGAATGCTGACGTGTGCTCAGAGTTTCCTCTACCAGAGATGCTGGACTTCCAGAAGGAGCATGGAGACACCTACAGCTTTGTCATCCTCGGCACCACTGCCAACAGAAAACAGTCCCTGAATTATGGCTGTATTGTTGAGAATGAGCAAACTGATGAGGTCTTGCATTATGTAGAGAAGCCCGGCACATTTGTGAGCGACATCATCAACTGTGGAATATACCTGTTTACTCCGGAGATTTTCCAGCACATTGGATCAGTTTTCCAGAAGAACCAGCAGGAAATGTTGTTATATTCATACGAGGGAGAGGAGCAGTCTAACGGCTGGCATCGAGCAGAGGTGATCCGTCTGGAGCAGGACATCTTCACTGCTCTGGCAGGGCAGGGCAAGCTTTACGTGTACAAAACAGACCGATTCTGGAGCCAGATCAAATCTGCTGGATCTGCGATTTATGCAAGCCGTTTGTATCTGAATCAATATCACAAGACACATCCAGAGAGGTTAGCTACTAATACAGAGGGAGGAGCAAAGACCAGAGGAAATGTTTACATTCATCCCACTGCCAACATTGATCCTACTGCTGTGttaGGTCCGAATGTGTCAATAGGAACAGGCGTAACGATCGGTGCAGGAGTTCGTGTGAGGGAGTCCATCATCCTTCATGGTGCTACCTTACAAGATCACAGCTGCGTGCTGAACAGCATTGTGGGTTGGGAAAGCACCATTGGCAAATGGGCCAGAGTGGAGGGAACTCCCAGTGACCCCAATCCTAATGACCCATACGCCAAAATTGACAGCGAGACGCTCTTCAGAGATGGAAAGCTAACTCCTTCCATTACAATTCTAGGCTGTAATGTAAACATCCCGTCTGAGGTCATCATACTCAACTCTATCGTCCTGCCGCACAAAGATCTCAACAGAAGCTTTAAGAACCAGATCATACTGTAGTTCCACTATTGTGAGTAGTTTGGGCATTtggatataaacaaaaaaaaataaataaatgttatggtTTAGATGTTAAAATGTTTGGTGATGTGTAGAGTGCAGATGGATTTACCAGATGTGTTATGATGCCAAAGCTGGATAAAAAGAAACATAAGAAAAGTGTTTTTGAAATGacttgaaatgttttatttgctGTTGGCTCGTGGCAATGAAATGTCAAAATGAAATGCTATTTGTGAACTCTGTTACCATTTTTTTTCAGCAATGAATATATGTAGCACAAAAAAGGGAAGACAAATGGTAAAATCTTGTAATTGCAGACCAGCCGTGTTggtaattgttttgaataattgaTGTTTCTGTGACTGCTCCCTGTATGAAAGCTGAGCAGAGTGCAAGATTTAGACATCggcaataaattatattttgattaagtcaCAAAGGGTAATAAAGGGATTCACTGCTGCCCTTGTAGAAATCACAGTCTGTATTTATGGTGTAAGAGCTACATGAGCATCAATTATTTTTTACCTAACCTTGACGGTTGAGACAAATTAACTAAAGACTTCACATCATTTTTTTCAgaggtgacaaaaaaaaaaatctaagaacaGTTTAACAACTGATAAAATTTCCCACAGCTTTTCATTTATACAGTATACCATGAATActtatgtatatttaaattgtTACATAATTTATAGTTTTACACTACATAAAACTgtgtacactcaccagccactttgataggtacacctgtccaactgctcgtaaaCGGAGATttttaattagccaatcacatggcagcaattctaTGTAGACATTTGGACATGGTCAATACGATCGgcagcagttcaaactgagcatcagaatggggatgaaaGATAATTTCAGTGACTtggaacgtggcatggttgttggtgccagacgttctgagtatttcagagactgctgatctactggaattttcaaccaaaccatctctagggtttacagggaattttctgaaaaagagaaaatatccagtgtgcGGCAATTCAGTGgaagcaaatgccttgttgatagaggagaatggccagactggtttaaactaatagaaaggcaaccgtaactcaaaaaaaaaaaaaaactacttgttACAacctgaggtatgcagaagagcatctctgaatgcacaacatgtccaaccttgaggtggattggctacaccaggtgccactcctgtaagcAAGAGCAAACAAGAAACAAttcacacaagctcaccaaaattggacaatagaagattggaaaaacatttgctggtctgatgagtctctatttctgctgcaacgttcggaaggtagggtcagaatttagcgtcagcaacatgaaagcatggatccttcCTGCCTTGTTTCAGCGGTTCAGtctagtggtggtgtaatggtgttggggatattttcttggcacattttgggcctattagtaccattTAAGCATTgagtcaacgccacagcctacagtgcctgattattgttgctgaccgtgtgcatccctttatgaccacagtatacccatctactgatggctacttATGGTAGGaaaatgcaccatgtcataaagcacaaatcatctcagactggtttcttgaacttgacaatgagttcactgtacacaaatggcctacacagtcaacagaactcaatccaatagagcacttttggaatGTTTTGGAACAGGAGgttcgcatcatagatgtgcagccaacaaatctgcatccACTGCaagatgctgtcatgtcaatatggaccaaaatctcagaaaAATATTAACAGTTCCGTGTTGAATCCatgacatgaaggattaaggcagttttgaa

Function

GO:

id name namespace
GO:0009298 GDP-mannose biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0004475 mannose-1-phosphate guanylyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-37 Predicted to enable GTP binding activity and mannose-1-phosphate guanylyltransferase activity. Predicted to be involved in GDP-mannose biosynthetic process. Predicted to act upstream of or within biosynthetic process. Orthologous to human GMPPA (GDP-mannose pyrophosphorylase A).

Ensembl:

ensembl_id ENSDART00000003543

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075072 lncRNA upstream 10767 10737086 ~ 10760113 (+) True XLOC_036985
TCONS_00074886 lncRNA upstream 205934 10562638 ~ 10564946 (+) True XLOC_036982
TCONS_00075071 lncRNA upstream 613333 10155978 ~ 10157547 (+) True XLOC_036979
TCONS_00072798 lncRNA upstream 835814 9934310 ~ 9935066 (+) True XLOC_036977
TCONS_00075070 lncRNA upstream 873923 9893106 ~ 9896957 (+) True XLOC_036976
TCONS_00072807 lncRNA downstream 156113 10936773 ~ 10938469 (+) True XLOC_036987
TCONS_00075073 lncRNA downstream 1680959 12461619 ~ 12469043 (+) True XLOC_036995
TCONS_00072832 lncRNA downstream 2162619 12943279 ~ 12943755 (+) False XLOC_037000
TCONS_00072835 lncRNA downstream 2296192 13076852 ~ 13089863 (+) True XLOC_037001
TCONS_00072841 lncRNA downstream 2452915 13233575 ~ 13234144 (+) False XLOC_037003
TCONS_00072804 mRNA upstream 11367 10699038 ~ 10759513 (+) True XLOC_036984
TCONS_00072803 mRNA upstream 75950 10692905 ~ 10694930 (+) True XLOC_036983
TCONS_00072799 mRNA upstream 727021 10014514 ~ 10043859 (+) False XLOC_036978
TCONS_00072800 mRNA upstream 727021 10014817 ~ 10043859 (+) True XLOC_036978
TCONS_00072796 mRNA upstream 820393 9927516 ~ 9950487 (+) False XLOC_036977
TCONS_00072808 mRNA downstream 253654 11034314 ~ 11229565 (+) False XLOC_036988
TCONS_00072809 mRNA downstream 254307 11034967 ~ 11035779 (+) False XLOC_036988
TCONS_00072810 mRNA downstream 421892 11202552 ~ 11228363 (+) True XLOC_036988
TCONS_00072811 mRNA downstream 501309 11281969 ~ 11341315 (+) False XLOC_036989
TCONS_00072812 mRNA downstream 513170 11293830 ~ 11341315 (+) True XLOC_036989
TCONS_00072801 other upstream 426900 10343864 ~ 10343980 (+) True XLOC_036980
TCONS_00072788 other upstream 1378649 9371502 ~ 9392231 (+) True XLOC_036971
TCONS_00072789 other upstream 1392902 9377863 ~ 9377978 (+) True XLOC_036972
TCONS_00072785 other upstream 1651633 9118553 ~ 9119247 (+) True XLOC_036969
TCONS_00072784 other upstream 1652580 9116996 ~ 9118300 (+) False XLOC_036969
TCONS_00072815 other downstream 667117 11447777 ~ 11447909 (+) True XLOC_036991
TCONS_00072820 other downstream 1663859 12444519 ~ 12454758 (+) False XLOC_036994
TCONS_00072821 other downstream 1663864 12444524 ~ 12454943 (+) True XLOC_036994
TCONS_00072822 other downstream 2047345 12828005 ~ 12828120 (+) True XLOC_036996
TCONS_00072843 other downstream 2458157 13238817 ~ 13246526 (+) True XLOC_037003

Expression Profile

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