Dataset ID | Species | Tissue / Organ | Cell cluster | Cell type | Experiment type | Sample | Marker gene | Marker class | Evidence | |
---|---|---|---|---|---|---|---|---|---|---|
GSE158142 (5dpf) | Danio rerio | brain, eye | 11 | Erythroid cells | baseline | 5dpf, untreatment | ENSDARG00000038643 (alas2) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (5dpf) | Danio rerio | brain, eye | 11 | Erythroid cells | baseline | 5dpf, untreatment | ENSDARG00000057206 (nmt1b) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (5dpf) | Danio rerio | brain, eye | 11 | Erythroid cells | baseline | 5dpf, untreatment | -- (hbae1) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (8dpf) | Danio rerio | brain, eye | 10 | Erythroid cells | baseline | 8dpf, untreatment | -- (hbz) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (8dpf) | Danio rerio | brain, eye | 10 | Erythroid cells | baseline | 8dpf, untreatment | ENSDARG00000038643 (alas2) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (8dpf) | Danio rerio | brain, eye | 10 | Erythroid cells | baseline | 8dpf, untreatment | ENSDARG00000034852 (nt5c2l1) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (8dpf) | Danio rerio | brain, eye | 10 | Erythroid cells | baseline | 8dpf, untreatment | ENSDARG00000012881 (slc4a1a) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (8dpf) | Danio rerio | brain, eye | 10 | Erythroid cells | baseline | 8dpf, untreatment | ENSDARG00000105154 (creg1) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (8dpf) | Danio rerio | brain, eye | 10 | Erythroid cells | baseline | 8dpf, untreatment | ENSDARG00000018146 (gpx1a) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (15dpf) | Danio rerio | brain, eye | 8 | Erythroid cells | baseline | 15dpf, untreatment | ENSDARG00000115405 (hbbe1.2) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (15dpf) | Danio rerio | brain, eye | 8 | Erythroid cells | baseline | 15dpf, untreatment | -- (hbz) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (15dpf) | Danio rerio | brain, eye | 8 | Erythroid cells | baseline | 15dpf, untreatment | ENSDARG00000034852 (nt5c2l1) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (15dpf) | Danio rerio | brain, eye | 8 | Erythroid cells | baseline | 15dpf, untreatment | ENSDARG00000038643 (alas2) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (15dpf) | Danio rerio | brain, eye | 8 | Erythroid cells | baseline | 15dpf, untreatment | ENSDARG00000105154 (creg1) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (15dpf) | Danio rerio | brain, eye | 8 | Erythroid cells | baseline | 15dpf, untreatment | ENSDARG00000018146 (gpx1a) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (15dpf) | Danio rerio | brain, eye | 8 | Erythroid cells | baseline | 15dpf, untreatment | ENSDARG00000012881 (slc4a1a) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
PRJNA610520 (3.5dpf) | Danio rerio | caudal hematopoietic tissue | 4 | Erythroid cells | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ENSDARG00000089124 (hbae1.3) | marker | DOI:10.1016/j.cell.2008.01.025 | |
PRJNA610520 (3.5dpf) | Danio rerio | caudal hematopoietic tissue | 4 | Erythroid cells | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ENSDARG00000096667 (hemgn) | marker | DOI:10.1016/j.cell.2008.01.025 | |
PRJNA610520 (3.5dpf) | Danio rerio | caudal hematopoietic tissue | 4 | Erythroid cells | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ENSDARG00000038643 (alas2) | marker | DOI:10.1016/j.cell.2008.01.025 | |
PRJNA610520 (4.5dpf) | Danio rerio | caudal hematopoietic tissue | 3 | Erythroid cells | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ENSDARG00000089475 (hbae1.1) | marker | DOI:10.1016/j.cell.2008.01.025 | |
PRJNA610520 (4.5dpf) | Danio rerio | caudal hematopoietic tissue | 3 | Erythroid cells | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ENSDARG00000089124 (hbae1.3) | marker | DOI:10.1016/j.cell.2008.01.025 | |
PRJNA610520 (4.5dpf) | Danio rerio | caudal hematopoietic tissue | 3 | Erythroid cells | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ENSDARG00000038643 (alas2) | marker | DOI:10.1016/j.cell.2008.01.025 | |
PRJNA610520 (4.5dpf) | Danio rerio | caudal hematopoietic tissue | 12 | Erythroid cells | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ENSDARG00000089475 (hbae1.1) | marker | DOI:10.1016/j.cell.2008.01.025 | |
PRJNA610520 (4.5dpf) | Danio rerio | caudal hematopoietic tissue | 12 | Erythroid cells | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ENSDARG00000089124 (hbae1.3) | marker | DOI:10.1016/j.cell.2008.01.025 | |
PRJNA610520 (4.5dpf) | Danio rerio | caudal hematopoietic tissue | 12 | Erythroid cells | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ENSDARG00000038643 (alas2) | marker | DOI:10.1016/j.cell.2008.01.025 | |
GSE173972 (WT, ezh1+|+) | Danio rerio | embryo | 1 | Erythroid cells | baseline | 1.25dpf, Kdrl-positive embryos | ENSDARG00000089475 (hbae1.1) | marker | DOI:10.1016/j.stemcr.2021.05.014 | |
GSE173972 (HET, ezh1+|-) | Danio rerio | embryo | 1 | Erythroid cells | hematopoietic | 1.25dpf, Kdrl-positive embryos | ENSDARG00000089475 (hbae1.1) | marker | DOI:10.1016/j.stemcr.2021.05.014 | |
GSE173972 (HET, ezh1+|-) | Danio rerio | embryo | 2 | Erythroid cells | hematopoietic | 1.25dpf, Kdrl-positive embryos | ENSDARG00000089475 (hbae1.1) | marker | DOI:10.1016/j.stemcr.2021.05.014 | |
GSE173972 (KO, ezh1-|-) | Danio rerio | embryo | 1 | Erythroid cells | hematopoietic | 1.25dpf, Kdrl-positive embryos | ENSDARG00000089475 (hbae1.1) | marker | DOI:10.1016/j.stemcr.2021.05.014 | |
GSE173972 (KO, ezh1-|-) | Danio rerio | embryo | 9 | Erythroid cells | hematopoietic | 1.25dpf, Kdrl-positive embryos | ENSDARG00000089475 (hbae1.1) | marker | DOI:10.1016/j.stemcr.2021.05.014 | |
PRJNA564810 (2dpf) | Danio rerio | embryo | 28 | Erythroid cells | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development | ENSDARG00000045143 (hbbe2) | marker | DOI:10.1093/g3journal/jkac062 | |
PRJNA564810 (1dpf) | Danio rerio | embryo | 26 | Erythroid cells | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | ENSDARG00000045143 (hbbe2) | marker | DOI:10.1093/g3journal/jkac062 | |
PRJNA797645 | Gasterosteus aculeatus | embryo | 14 | Erythroid cells | baseline | 70 hpf, whole embryo, untreatment | ENSGACG00000006807 (alas2) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
PRJNA797645 | Gasterosteus aculeatus | embryo | 14 | Erythroid cells | baseline | 70 hpf, whole embryo, untreatment | ENSGACG00000009622 (slc4a1a) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
PRJNA797645 | Gasterosteus aculeatus | embryo | 14 | Erythroid cells | baseline | 70 hpf, whole embryo, untreatment | ENSGACG00000006837 (nmt1b) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (1.5dpf) | Danio rerio | head | 15 | Erythroid cells | baseline | 1.5dpf, untreatment | ENSDARG00000045143 (hbbe2) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (1.5dpf) | Danio rerio | head | 15 | Erythroid cells | baseline | 1.5dpf, untreatment | ENSDARG00000011166 (cahz) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (1.5dpf) | Danio rerio | head | 15 | Erythroid cells | baseline | 1.5dpf, untreatment | ENSDARG00000038643 (alas2) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (1.5dpf) | Danio rerio | head | 15 | Erythroid cells | baseline | 1.5dpf, untreatment | ENSDARG00000034852 (nt5c2l1) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (1.5dpf) | Danio rerio | head | 15 | Erythroid cells | baseline | 1.5dpf, untreatment | -- (hbz) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (2dpf) | Danio rerio | head | 13 | Erythroid cells | baseline | 2dpf, untreatment | ENSDARG00000012881 (slc4a1a) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (2dpf) | Danio rerio | head | 13 | Erythroid cells | baseline | 2dpf, untreatment | ENSDARG00000011166 (cahz) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (2dpf) | Danio rerio | head | 13 | Erythroid cells | baseline | 2dpf, untreatment | ENSDARG00000038147 (hbbe3) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (2dpf) | Danio rerio | head | 13 | Erythroid cells | baseline | 2dpf, untreatment | ENSDARG00000045143 (hbbe2) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (3dpf) | Danio rerio | head | 12 | Erythroid cells | baseline | 3dpf, untreatment | ENSDARG00000115405 (hbbe1.2) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (3dpf) | Danio rerio | head | 12 | Erythroid cells | baseline | 3dpf, untreatment | ENSDARG00000045143 (hbbe2) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (3dpf) | Danio rerio | head | 12 | Erythroid cells | baseline | 3dpf, untreatment | ENSDARG00000011166 (cahz) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
GSE158142 (3dpf) | Danio rerio | head | 12 | Erythroid cells | baseline | 3dpf, untreatment | ENSDARG00000113599 (hbbe1.1) | marker | DOI:10.1016/j.neuron.2020.09.023 | |
PRJNA608912 (wt_unjuried) | Danio rerio | heart | 10 | Erythroid cells | baseline | 5mpf, wild type, uninjured | ENSDARG00000011166 (cahz) | marker | DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901 | |
PRJNA608912 (wt_2dpi) | Danio rerio | heart | 13 | Erythroid cells | regeneration | 5mpf, wild type, 2 days post injury | ENSDARG00000011166 (cahz) | marker | DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901 | |
PRJNA608912 (wt_2dpi) | Danio rerio | heart | 13 | Erythroid cells | regeneration | 5mpf, wild type, 2 days post injury | ENSDARG00000012881 (slc4a1a) | marker | DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901 | |
PRJNA608912 (wt_7dpi) | Danio rerio | heart | 12 | Erythroid cells | regeneration | 5mpf, wild type, 7 days post injury | ENSDARG00000011166 (cahz) | marker | DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901 | |
PRJNA608912 (wt_7dpi) | Danio rerio | heart | 12 | Erythroid cells | regeneration | 5mpf, wild type, 7 days post injury | ENSDARG00000012881 (slc4a1a) | marker | DOI:10.1038/ng1137, DOI:10.15252/embr.202152901 | |
PRJNA608912 (wt_14dpi) | Danio rerio | heart | 11 | Erythroid cells | regeneration | 5mpf, wild type, 14 days post injury | ENSDARG00000011166 (cahz) | marker | DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901 | |
PRJNA608912 (wt_14dpi) | Danio rerio | heart | 11 | Erythroid cells | regeneration | 5mpf, wild type, 14 days post injury | ENSDARG00000012881 (slc4a1a) | marker | DOI:10.1038/ng1137, DOI:10.15252/embr.202152901 | |
PRJNA608912 (kit_uninjuried) | Danio rerio | heart | 14 | Erythroid cells | regeneration | 5mpf, kit mutant, uninjured | ENSDARG00000011166 (cahz) | marker | DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901 | |
PRJNA608912 (kit_2dpi) | Danio rerio | heart | 14 | Erythroid cells | regeneration | 5mpf, kit mutant, 2 days post injury | ENSDARG00000011166 (cahz) | marker | DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901 | |
PRJNA608912 (kit_2dpi) | Danio rerio | heart | 14 | Erythroid cells | regeneration | 5mpf, kit mutant, 2 days post injury | ENSDARG00000012881 (slc4a1a) | marker | DOI:10.1038/ng1137, DOI:10.15252/embr.202152901 | |
PRJNA608912 (kit_7dpi) | Danio rerio | heart | 8 | Erythroid cells | regeneration | 5mpf, kit mutant, 7 days post injury | ENSDARG00000011166 (cahz) | marker | DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901 | |
PRJNA608912 (kit_7dpi) | Danio rerio | heart | 8 | Erythroid cells | regeneration | 5mpf, kit mutant, 7 days post injury | ENSDARG00000012881 (slc4a1a) | marker | DOI:10.1038/ng1137, DOI:10.15252/embr.202152901 | |
PRJNA608912 (kit_7dpi) | Danio rerio | heart | 14 | Erythroid cells | regeneration | 5mpf, kit mutant, 7 days post injury | ENSDARG00000011166 (cahz) | marker | DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901 | |
PRJNA608912 (kit_7dpi) | Danio rerio | heart | 14 | Erythroid cells | regeneration | 5mpf, kit mutant, 7 days post injury | ENSDARG00000012881 (slc4a1a) | marker | DOI:10.1038/ng1137, DOI:10.15252/embr.202152901 | |
PRJNA608912 (kit_14dpi) | Danio rerio | heart | 13 | Erythroid cells | regeneration | 5mpf, kit mutant, 14 days post injury | ENSDARG00000011166 (cahz) | marker | DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901 | |
PRJNA608912 (kit_14dpi) | Danio rerio | heart | 13 | Erythroid cells | regeneration | 5mpf, kit mutant, 14 days post injury | ENSDARG00000012881 (slc4a1a) | marker | DOI:10.1038/ng1137, DOI:10.15252/embr.202152901 | |
PRJNA415636 (heart, blood) | Danio rerio | heart, blood | 2 | Erythroid cells | baseline | adult, Zebrabow M, heart and blood | ENSDARG00000097011 (hbaa1) | marker | DOI:10.1038/nbt.4124 | |
PRJNA415636 (heart, blood) | Danio rerio | heart, blood | 2 | Erythroid cells | baseline | adult, Zebrabow M, heart and blood | ENSDARG00000069735 (hbaa2) | marker | DOI:10.1038/nbt.4124 | |
PRJNA415636 (heart, blood) | Danio rerio | heart, blood | 2 | Erythroid cells | baseline | adult, Zebrabow M, heart and blood | ENSDARG00000077504 (si:ch211-103n10.5) | marker | DOI:10.1038/nbt.4124 | |
PRJNA754013 (Choy surface) | Astyanax mexicanus | hypothalamus | 18 | Erythroid cells | baseline | male, female, adult, untreatment | gpx1 (gpx1) | marker | DOI:10.1038/s41559-021-01580-3 | |
PRJNA754013 (Molino cave) | Astyanax mexicanus | hypothalamus | 18 | Erythroid cells | baseline | male, female, adult, untreatment | gpx1 (gpx1) | marker | DOI:10.1038/s41559-021-01580-3 | |
PRJNA754013 (Pachon cave) | Astyanax mexicanus | hypothalamus | 20 | Erythroid cells | baseline | male, female, adult, untreatment | gpx1 (gpx1) | marker | DOI:10.1038/s41559-021-01580-3 | |
PRJNA754013 (Tinaja cave) | Astyanax mexicanus | hypothalamus | 17 | Erythroid cells | baseline | male, female, adult, untreatment | gpx1 (gpx1) | marker | DOI:10.1038/s41559-021-01580-3 | |
PRJNA754013 (zebrafish) | Danio rerio | hypothalamus | 13 | Erythroid cells | baseline | adult, male, female, untreatment | ENSDARG00000071361 (si:ch211-197g15.10) | marker | DOI:10.1038/s41559-021-01580-3 | |
GSE137784 (HCC, CreLox) | Danio rerio | liver | 11 | Erythroid cells | disease | 6mpf, male, isolated from the zebrafish without HCC | ENSDARG00000038643 (alas2) | marker | DOI:10.1242/bio.047829 | |
GSE137784 (HCC, CreLox) | Danio rerio | liver | 11 | Erythroid cells | disease | 6mpf, male, isolated from the zebrafish without HCC | ENSDARG00000034852 (nt5c2l1) | marker | DOI:10.1242/bio.047829 | |
GSE137784 (no HCC) | Danio rerio | liver | 8 | Erythroid cells | baseline | 6mpf, male, isolated from the CreLox zebrafish with HCC | ENSDARG00000034852 (nt5c2l1) | marker | DOI:10.1242/bio.047829 | |
GSE159709 (melanoma) | Danio rerio | tumor | 3 | Erythroid cells | disease | adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells | ENSDARG00000038643 (alas2) | marker | DOI:10.1038/s41467-021-26614-z | |
GSE176129 (pdgfrb-positive) | Danio rerio | whole body | 44 | Erythroid cells | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ENSDARG00000089475 (hbae1.1) | marker | DOI:10.7554/eLife.44431 | |
GSE158099 (WT) | Danio rerio | whole body | 7 | Erythroid cells | baseline | 2.5dpf, cd41:GFPlow-WT | ENSDARG00000113599 (hbbe1.1) | marker | DOI:10.1182/bloodadvances.2020003969 | |
GSE158099 (runx1 -|-) | Danio rerio | whole body | 3 | Erythroid cells | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- | ENSDARG00000113599 (hbbe1.1) | marker | DOI:10.1182/bloodadvances.2020003969 | |
GSE158099 (WT) | Danio rerio | whole body | 3 | Erythroid cells | baseline | 6dpf, cd41:GFPlow-WT | ENSDARG00000113599 (hbbe1.1) | marker | DOI:10.1182/bloodadvances.202000396 | |
GSE158099 (WT) | Danio rerio | whole body | 8 | Erythroid cells | baseline | 10dpf, cd41:GFPlow-WT | ENSDARG00000113599 (hbbe1.1) | marker | DOI:10.1182/bloodadvances.202000396 | |
GSE158099 (runx1 -|-) | Danio rerio | whole body | 4 | Erythroid cells | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- | ENSDARG00000113599 (hbbe1.1) | marker | DOI:10.1182/bloodadvances.2020003969 |