DATASET ID: GSE158142 (1.5dpf)

Basic information

Tissue / Organ head
Experiment type baseline
Sample 1.5dpf, untreatment
Source dataset ID GSM4793199
Project ID GSE158142
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Neuron ENSDARG00000055216 (tuba1c) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    1 Neuron ENSDARG00000104945 (sncb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Pharyngeal arch ENSDARG00000076010 (twist1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Pharyngeal arch ENSDARG00000007407 (barx1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Pharyngeal arch ENSDARG00000011956 (dlx4a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSDARG00000060115 (lrrn1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSDARG00000032963 (her12) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Neuron ENSDARG00000104945 (sncb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Neuron ENSDARG00000020609 (snap25a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Neuron ENSDARG00000038574 (scg2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Neuron ENSDARG00000059057 (atpv0e2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Neuron ENSDARG00000056108 (ndufa4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Neuron ENSDARG00000071011 (cdk5r2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Retina neuroblasts ENSDARG00000068168 (hes2.2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Retina neuroblasts ENSDARG00000056292 (vsx1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Retina neuroblasts ENSDARG00000010591 (foxn4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Chondrocytes -- (lect1) -- marker DOI:10.1016/j.neuron.2020.09.023
    7 Chondrocytes ENSDARG00000015947 (matn4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Chondrocytes ENSDARG00000037845 (col9a3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Chondrocytes ENSDARG00000073699 (col9a1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Progenitors ENSDARG00000060115 (lrrn1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000044001 (lgals3b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000088717 (ecrg4b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000044356 (tp63) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000040045 (cldn1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000005108 (oclna) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000010478 (hsp90aa1.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000030110 (myod1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000028213 (ttn.2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000009438 (myog) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000076126 (actc1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000036371 (acta1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000102206 (stc2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000036869 (tcf21) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000007277 (myf5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Neuron ENSDARG00000054878 (six2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Neuron ENSDARG00000058699 (tmeff2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Pigment cell (neural crest derived) -- (urah) -- marker DOI:10.1016/j.neuron.2020.09.023
    13 Pigment cell (neural crest derived) ENSDARG00000044684 (rbp4l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Pigment cell (neural crest derived) ENSDARG00000056028 (slc22a7a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Pigment cell (neural crest derived) ENSDARG00000103789 (tmem130) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Pigment cell (neural crest derived) ENSDARG00000075191 (oacyl) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 RPE ENSDARG00000033760 (pmelb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 RPE ENSDARG00000002593 (slc45a2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 RPE ENSDARG00000029204 (tyrp1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 RPE ENSDARG00000061303 (oca2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Erythroid cells ENSDARG00000045143 (hbbe2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Erythroid cells ENSDARG00000011166 (cahz) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Erythroid cells ENSDARG00000038643 (alas2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Erythroid cells ENSDARG00000034852 (nt5c2l1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Erythroid cells -- (hbz) -- marker DOI:10.1016/j.neuron.2020.09.023
    16 Neutrophils ENSDARG00000090783 (mfap4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Neutrophils ENSDARG00000054942 (lgals2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Neutrophils ENSDARG00000093608 (ccl34b.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Neutrophils ENSDARG00000104077 (fcer1gl) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Neutrophils ENSDARG00000056874 (lygl1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Neutrophils ENSDARG00000040178 (havcr1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Neutrophils ENSDARG00000090873 (ccl34a.4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Neutrophils ENSDARG00000055290 (mpeg1.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Neutrophils ENSDARG00000013598 (tnfb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Neutrophils ENSDARG00000040528 (lgals3bpb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Lens ENSDARG00000041952 (prox2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Lens ENSDARG00000041141 (cryba1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Lens ENSDARG00000054150 (cx23) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)