Fish Single-cell RNA Database

GENE ID: ENSDARG00000021336

Symbol	Location	Gene type	Genome version	Species
pax4	4: 19700308 ~ 19704628 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000021336 (pax4), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000021336	pax4	4: 19700308 ~ 19704628 (+)
ENSDARG00000035984	mnx1	7: 40638210 ~ 40641006 (+)
ENSDARG00000105630	alpk3b	7: 30109990 ~ 30127082 (-)
ENSDARG00000004023	isl1	5: 40728613 ~ 40734045 (-)
ENSDARG00000044155	mafaa	6: 32699359 ~ 32703317 (-)
ENSDARG00000037000	fkbp11	6: 7428613 ~ 7439490 (-)
ENSDARG00000014479	ptf1a	2: 29710857 ~ 29711761 (+)
ENSDARG00000014190	sst2	2: 5726353 ~ 5728843 (-)
ENSDARG00000056196	slc2a2	2: 25816843 ~ 25837986 (+)
ENSDARG00000019566	neurod1	9: 44291721 ~ 44295071 (-)
ENSDARG00000001785	irx2a	16: 555746 ~ 563732 (-)
ENSDARG00000041702	rfx6	20: 42506612 ~ 42534504 (-)
ENSDARG00000068006	gck	8: 40476811 ~ 40490593 (+)
ENSDARG00000053301	insm1b	17: 41463942 ~ 41466145 (+)
ENSDARG00000053298	nkx2.2a	17: 42208623 ~ 42218652 (-)
ENSDARG00000016951	neurog3	13: 25761279 ~ 25762391 (+)
ENSDARG00000104735	nkx6.2	13: 51579851 ~ 51584264 (+)
ENSDARG00000078989	alpk3a	18: 26719787 ~ 26755230 (+)
ENSDARG00000016854	neurod2	12: 14920088 ~ 14922955 (-)
ENSDARG00000079637	alpk2	21: 10866421 ~ 10880565 (+)
ENSDARG00000022569	nkx6.1	21: 19070921 ~ 19073831 (+)
ENSDARG00000002779	pdx1	24: 21684189 ~ 21686706 (+)
ENSDARG00000079296	gcga	22: 11617520 ~ 11626018 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	Corpuscles of stannius (cluster: 8)	potential marker	NA
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000021336

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences