Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
hmx3a | 17: 21790606 ~ 21793113 (-) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ |
Epidermal cells (cluster: 13) |
potential marker |
NA |
|
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
Ionocyte progenitors (cluster: 3) |
potential marker |
NA |
|
PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells |
Neuron (cluster: 6) |
potential marker |
NA |
|
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae |
Support cells (cluster: 8) |
potential marker |
NA |
|
PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days | NA | NA | NA | |
GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment |
Horizontal cells (cluster: 13) |
potential marker |
NA |
|
GSE122680 (14dpf) | retina | baseline | 14dpf, WT, untreatment |
Horizontal cells (cluster: 9) |
potential marker |
NA |
|
GSE122680 (2dpf) | retina | baseline | 2dpf, WT, untreatment |
Horizontal cells (cluster: 12) Horizontal cells (cluster: 12) |
potential marker potential marker |
NA NA |
|
PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih | NA | NA | NA | |
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone |
Neuron (cluster: 15) |
potential marker |
NA |
|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish | NA | NA | NA | |
PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain | NA | NA | NA | |
GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment | NA | NA | NA | |
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | NA | NA | NA | |
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment | NA | NA | NA | |
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | NA | NA | NA | |
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | NA | NA | NA | |
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- | NA | NA | NA | |
PRJNA706197 (18hpf) | embryo | baseline | 18hpf, FACS sorted sox10:nEOS cells | NA | NA | NA | |
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | NA | NA | NA | |
GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo | NA | NA | NA | |
PRJNA656271 (2dpf) | embryo | baseline | 2dpf, FACS-isolated EGFP+ cells | NA | NA | NA | |
PRJNA734348 (shield, dnmt1) | embryo | growth | 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) | NA | NA | NA | |
GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells | NA | NA | NA | |
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development | NA | NA | NA | |
GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | NA | NA | NA | |
PRJNA706197 (14hpf) | embryo | baseline | 14hpf, FACS sorted sox10:nEOS cells | NA | NA | NA | |
PRJNA656271 (24hpf) | embryo | baseline | 24hpf, FACS-isolated EGFP+ cells | NA | NA | NA | |
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development | NA | NA | NA | |
PRJNA706197 (20hpf) | embryo | baseline | 20hpf, FACS sorted sox10:nEOS cells | NA | NA | NA | |
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos | NA | NA | NA | |
PRJNA640816 (2dpf) | embryo | baseline | 2dpf, FACS isolated -4.9sox10:EGFP+ cells | NA | NA | NA | |
GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo | NA | NA | NA | |
PRJNA656271 (1.5dpf) | embryo | baseline | 1.5dpf, FACS-isolated EGFP+ cells | NA | NA | NA | |
GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells | NA | NA | NA | |
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | NA | NA | NA | |
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum | NA | NA | NA | |
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment | NA | NA | NA | |
GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | NA | NA | NA | |
GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment | NA | NA | NA | |
GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment | NA | NA | NA | |
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment | NA | NA | NA | |
GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment | NA | NA | NA | |
GSE158142 (2dpf) | head | baseline | 2dpf, untreatment | NA | NA | NA | |
GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment | NA | NA | NA | |
GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment | NA | NA | NA | |
PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver | NA | NA | NA | |
PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment | NA | NA | NA | |
GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl | NA | NA | NA | |
GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated | NA | NA | NA | |
GSE123241 (fgf3 mutants) | neuromast | regeneration | 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory | NA | NA | NA | |
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae | NA | NA | NA | |
GSE123241 (fgf3 siblings) | neuromast | regeneration | 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory | NA | NA | NA | |
GSE123241 (wild type) | neuromast | baseline | 5dpf, wild type during sensory hair cell regeneration, lateral line sensory | NA | NA | NA | |
PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours | NA | NA | NA | |
PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS | NA | NA | NA | |
GSE148591 (6mpf) | pituitary | baseline | 6mpf, male, Sox17:CreERT2 | NA | NA | NA | |
GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | NA | NA | NA | |
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet | NA | NA | NA | |
GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment | NA | NA | NA | |
PRJNA672101 (WT) | retina | baseline | 5mpf, three retinas from WT zebrafsih | NA | NA | NA | |
GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment | NA | NA | NA | |
GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | NA | NA | NA | |
PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) | NA | NA | NA | |
PRJNA551501 (8mpf) | thyroid gland | baseline | 8mpf, Tg(tg:mVenus-T2A-NTR) | NA | NA | NA | |
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment | NA | NA | NA | |
GSE163907 (24hpf) | trunk | baseline | 24hpf, trunk tg(sox10:GFP) positive cells | NA | NA | NA | |
PRJNA641144 (M_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo metastases | NA | NA | NA | |
PRJNA641144 (D_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vitro individual culture | NA | NA | NA | |
PRJNA641144 (C_INV) | tumor | disease | adult, ZMEL1-INV cells in vitro co-culture | NA | NA | NA | |
PRJNA641144 (M_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vivo metastases | NA | NA | NA | |
PRJNA641144 (P_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo primary tumors | NA | NA | NA | |
PRJNA641144 (C_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vitro co-culture | NA | NA | NA | |
PRJNA641144 (D_INV) | tumor | disease | adult, ZMEL1-INV cells in vitro individual culture | NA | NA | NA | |
PRJNA641144 (P_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vivo primary tumors | NA | NA | NA | |
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | NA | NA | NA | |
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | NA | NA | NA | |
GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- | NA | NA | NA | |
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | NA | NA | NA | |
GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT | NA | NA | NA |