GENE ID: ENSDARG00000111106

Symbol Location Gene type Genome version Species
arl3l1 21: 33172526 ~ 33187913 (+) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000111106 (arl3l1), yellow represents other genes.
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    • MARKER



    EXPRESSION

    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Placode (cluster: 6)
    		 marker
    		 DOI:10.1016/j.neuron.2020.09.023
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Pineal gland (cluster: 23)
    		 potential marker
    		 NA
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment Retina (cluster: 10)
    		 potential marker
    		 NA
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Retina (cluster: 11)
    		 potential marker
    		 NA
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells Epithelial cells (cluster: 7)
    		 potential marker
    		 NA
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 11)
    Photoreceptor cells (cluster: 16)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 14)
    		 potential marker
    		 NA
    GSE158142 (2dpf) head baseline 2dpf, untreatment Retina (cluster: 9)
    		 potential marker
    		 NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Retina (cluster: 11)
    		 potential marker
    		 NA
    GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg Red cones (cluster: 7)
    		 potential marker
    		 NA
    GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment Photoreceptor cells (cluster: 3)
    Photoreceptor cells (cluster: 8)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment Photoreceptor cells (cluster: 5)
    		 potential marker
    		 NA
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment Photoreceptor cells (cluster: 11)
    Retinal progenitors (cluster: 4)
    Photoreceptor cells (cluster: 11)
    Retinal progenitors (cluster: 4)
    		 potential marker
    potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    NA
    PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih Cone (cluster: 3)
    Rod (cluster: 5)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA672101 (WT) retina baseline 5mpf, three retinas from WT zebrafsih Rod (cluster: 2)
    Cone (cluster: 4)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/-
    PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
    GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
    GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled)
    PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development
    GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
    PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
    PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
    PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment
    GSE158142 (24hpf) head baseline 24hpf, untreatment
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment
    PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours
    PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS
    GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2
    GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment
    PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR)
    PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR)
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
    GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/-
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-

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