G678751


Basic Information

Item Value
gene id G678751
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1059843 ~ 1066091 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799410
CACGTTCAGAAAGACAATTTACAAACATCGAAAATATATATATATATATATATATATATATATATATATACTTTTTTTTCCACAATCTTTTTCTTGCAACTGTATATATGAAATTGGATCATGAACAGTTGGTATCGATCCATCTCTGAGAATCAACCAGTGGTACACCATTGTCGCTTGTGAAAACAAAATGGCGGCGCCGTGGGTGGAAACGTGCAGATTAAGGGGTGGTAATATTATAATAAAATCCCCTTCCTACGTCACTAGGGGAGCGAAATCTGAGCGTATAATTTTTTCACATGCTTGCAGAGAAAGTCTTGCCAAAGCAAAGTTACTGGGTTGTCCTTTTTCTTGTTTTCTGGTTTGGTAGATGCACTGGGGACCCGATTATAGCACTTGAACACGGAAAAGGACCTCACGCAGATGTGTCCAGGCGTGGCATTTTGAAAAGGTGAAGACGTCCTGAAGTTGGCTTTGTGTTGTGGTGCTCGTACGGAAGATGCAGGTTGATTCGGGCCTGCATTTTGTCCCATCACATGTGATGAAGTGCTACAGATGGATGTTGGTGGACGGATCTGATATCAGACTATACAGTACAATCAGATTCAAGCCAAAAATTGTGCTCACGATTGCAGCGACTGTATGAAAGTGTCCATGAAAGTGTTCACATTCACCAACACACGGACGGATCTCCTCTTCTCTGCTGTACTCAATTCCAACAGCTGAACTCCTCTGACAGACGAGTTTTGCATGAAATCATTTGGAAAGTAAATAGGAGAGATGTGGCGGGCTCATTCTCATAGACGTGTGGGATAATTTGATCTAGTGAAGTGTCCCGATCAATCAGAGAGTCGTCCGTCTCAAGAAGAGTGTCAACAGGGAATATTGACCTGAAGTCACAATGGATCACTTCGCAGCAGTTAAACTGCTGTGCCTTGAGCAGAAGGACCGCTCCCTCGAGGCACATTTGGAGGATTTTCTCAGCCTCGTACCAGCTACAACTTTCTGGACAACTGCCTCTGCAGCTTCCTGTATGCCAGCCTCAACACCACCACCAAGGAGCAGCTGCCCGGGGAAGGCCCTCGAGGGAGCTTCGCCAGATACGAAGAGTGGGTGCTGGTGTCATGTGATTCGCCGCTCACAGTGGACATCATCGACGACGATGACGCCAGCCCCACTAGCTACCCAGTGCCCAGCCAACAACACCCAGACTGCAGGGATCGGCAGCCCGAGCTCACCGCAGGCAACGAGAGCCACTCCGCCACGACATACGAGCCAAGGCACACAAGAGCGACTGAGCTGAACATCGCCACGGAGCCTGAGCAACGCGTGCCTGACCAGGTGTGTGAGCCAGCAGCTTCATCCATCGCTGAGGGAGTCCTTGTGGAGTATGAAGGGATTGAAACGCCCCCCACCCCCGCCACTGAGATCCTCAGCTAATCTTGCCACCCAGTCATCGCTACCTCCCATCAGTCCCTCAGCGCCTCCTCTCAGTGGTAAGTCTACACCTCAAGCCCGCTGGGAGCCATCTCTTCCTGGCTGTGGGAAGCCTGTGGCTCCGTCTCTGCCTCTGCACGCTCCACTCCTCCTCGACCCGTCGCCCTGGCTCCTGCGTCTGCGCTCCTTCCTACCTCGATGTCGGCAGTGACCATCAAGCGTTCAGCCTCGCCGGGCTCCCTCAGTATGTCGGCTCCACCTGGGTTGGGTATCACTACACCTACGCTGCGGACTTGCAGGCCGGTCATTGCTCTCCGGCCCTCCACCCCTTCAGCTTTGGCCAGCTCCTCCCTCCCTCAGGCTCCGCCTCTGCCTTTGGTCGCTCCAGCTCGACTTCAGCCCTCTGGATCCTATCTCGGGTGGTTGTCACTGCGGCTATGTCGTGGCCGCCTAGATCTTCGGAGTCCCTTCGCTACATCGGCCATCGGCCTTCCTCCACGTCATCGTTGCCTCCGGTCGTCCCCATGGTGGCATCAGTAACTACATCACCAAGTCTCCTCCCTCCTGCGACGCCGCCATGGGGCGCAGTCTCTGCTGTGGCCTGGGTCAGCAACTATCTTCCTCTGCTCAAGGCTCAACCTGGACTCAAGCCGTCCACCTCCAGAACCGCCTCCTCCATCATTTGCCCATTTCATCATCTCTTCATCCTCACCTCCTCTCTACGACGCTCCTTCCGGGAGGGGGCGTTCTGTCACACGCTCACACCACATGGACTTTCAGTTAGTTTGTTTTCATTAGTCACATGTGGTCCTCTGTTCTTTTTTCCCCTCCACAATCAGTCACCATGGACACTGCACTAATCATCACAGCTGTTTGTCATTTGAGTTAATCATCTGTTTATATAAGTTCAGTTCTGTTGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU799410 True 2358 TUCP 0.52 7 1059843 1066091

Neighbor

gene id symbol gene type direction distance location
CI01180000_00955725_01050852 SIPA1L2 coding upstream 8017 954922 ~ 1051826 (+)
CI01180000_00947514_00949868 NA coding upstream 108937 946421 ~ 950906 (+)
CI01180000_00862066_00867985 NA coding upstream 191731 860746 ~ 868112 (+)
CI01180000_00812535_00858607 NA coding upstream 200838 811857 ~ 859005 (+)
CI01180000_00765917_00776252 NA coding upstream 282932 765797 ~ 776911 (+)
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding downstream 130695 1196786 ~ 1224915 (+)
CI01180000_01372608_01374455 NA coding downstream 304670 1370761 ~ 1374547 (+)
CI01180000_01380859_01385445 NA coding downstream 314610 1380701 ~ 1385783 (+)
CI01180000_01492241_01493781 NA coding downstream 425580 1491671 ~ 1494446 (+)
CI01180000_01542059_01545609 GGPS1 coding downstream 475968 1542059 ~ 1546080 (+)
G678639 NA non-coding upstream 152461 902610 ~ 907382 (+)
G678638 NA non-coding upstream 176815 880016 ~ 883028 (+)
G678736 NA non-coding upstream 182245 877352 ~ 877598 (+)
G678660 NA non-coding upstream 256353 802951 ~ 803490 (+)
G678653 NA non-coding upstream 260905 798689 ~ 798938 (+)
G678641 NA non-coding downstream 45112 1111203 ~ 1116492 (+)
G678773 NA non-coding downstream 52198 1118289 ~ 1118645 (+)
G678775 NA non-coding downstream 59847 1125938 ~ 1126610 (+)
G678631 NA non-coding downstream 90231 1156322 ~ 1159139 (+)
G678646 NA non-coding downstream 107544 1173635 ~ 1177276 (+)
G678440 NA other upstream 908191 147934 ~ 151652 (+)
G678637 NA other downstream 83460 1149551 ~ 1155672 (+)
G678946 NA other downstream 452262 1518353 ~ 1612547 (+)
G679076 NA other downstream 729079 1795170 ~ 1799433 (+)
G679324 NA other downstream 1322776 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 1623671 2689271 ~ 2693221 (+)

Expression


Co-expression Network