XLOC_000315 (ndufb6)


Basic Information

Item Value
gene id XLOC_000315
gene name ndufb6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26099250 ~ 26103232 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000513
TTCGCTTTGCACTCTGGGAAGTTTGTCCTCTTCAGCTGTCATTGTAGATTCTGCTTGGTTggaaaaaatagacaaaaacagTATGTCCGGATACACACCGGATCAAAAACTGCGCTTTGAGCAGTTAGTAAAGCTCCGCCGGCAGTGGCTGAAAGACCAGGAGCTCAGTCCTCGAGAGCCCGTCGTTGCACCTTCAACACCCGGCCGCATAGAGCGATTCTGGACCCGATTCCTGGAGCCCAAAACACTATGGAGACTTTACACATATAAAGCCTATTTCGCCGGTGTTACAACCCTCAAGGTGGTTCTGCTCCCAGCCTGGGTCCTGCATTACTATCTGAAATACCACGTCTCTGAAACACCATTTGCAATAAGCGCTCAAAAACCCAAACTGTTTCCTGGAGACgtcattttggaaacaggagaggTTGTCCCAGATTTTCCCGAAGACAGTCATGGTCATCATTAATGATACCTGATTAAATTCAGTTTCAATATGcctgtgtgcatgtttttgtgtaTACTATGTCAATAAAGTTTATTATACTTTA
>TCONS_00000514
GTAGATTCTGCTTGGTTggaaaaaatagacaaaaacagTATGTCCGGATACACACCGGATCAAAAACTGCGCTTTGAGCAGTTAGTAAAGCTCCGCCGGCAGTGGCTGAAAGACCAGGAGCTCAGTCCTCGAGAGCCCGTCGTTGCACCTTCAACACCCGGCCGCATAGAGCGATTCTGGACCCGATTCCTGGAGCCCAAAACACTATGGAGACTTTACACATATAAAGCCTATTTCGCCGGTGTTACAACCCTCAAGGTGGTTCTGCTCCCAGCCTGGGTCCTGCATTACTATCTGAAATACCACGTCTCTGAAACACCATTTGCAATAAGCGCTCAAAAACCCAAACTGTTTCCTGTAAGTATATTTGGTCCAAGCCagatgtgtaaaacatacacaGAACTACAATCTGctaacctgcgcttgcgtttgtttgatccaggaatgcaaaaCCTAGCACAACCACTGGGTGTGAAAATTACATACTCCacctttaaaatttaatatttttcta

Function

symbol description
ndufb6 Predicted to be involved in mitochondrial ATP synthesis coupled electron transport. Predicted to act upstream of or within mitochondrial electron transport, NADH to ubiquinone. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including adaxial cell; alar plate midbrain region; optic tectum; optic vesicle; and retina. Orthologous to human NDUFB6 (NADH:ubiquinone oxidoreductase subunit B6).

GO:

id name namespace
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-040426-1781 Predicted to be involved in mitochondrial ATP synthesis coupled electron transport. Predicted to act upstream of or within mitochondrial electron transport, NADH to ubiquinone. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including adaxial cell; alar plate midbrain region; optic tectum; optic vesicle; and retina. Orthologous to human NDUFB6 (NADH:ubiquinone oxidoreductase subunit B6).

Ensembl:

ensembl_id ENSDARG00000037259

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000513 False 551 mRNA 0.45 4 26099250 26103232
TCONS_00000514 True 514 lncRNA 0.45 3 26099293 26101025

Neighbor

gene id symbol gene type direction distance location
XLOC_000314 mxd4 coding upstream 2678 26071869 ~ 26096572 (+)
XLOC_000313 BX323448.1 coding upstream 53535 26012668 ~ 26045715 (+)
XLOC_000312 fabp2 coding upstream 247675 25848231 ~ 25851575 (+)
XLOC_000311 gucy1b1 coding upstream 257591 25801648 ~ 25841659 (+)
XLOC_000310 gucy1a1 coding upstream 300199 25783801 ~ 25799051 (+)
XLOC_000316 toporsa coding downstream 1909 26105141 ~ 26109961 (+)
XLOC_000317 mtap coding downstream 7753 26110985 ~ 26127944 (+)
XLOC_000318 tet2 coding downstream 252973 26356205 ~ 26402046 (+)
XLOC_000319 arhgef38 coding downstream 308264 26411496 ~ 26437820 (+)
XLOC_000320 g3bp2 coding downstream 341754 26444986 ~ 26466002 (+)
XLOC_000308 NA non-coding upstream 377548 25719653 ~ 25721702 (+)
XLOC_000305 NA non-coding upstream 545951 25550053 ~ 25553299 (+)
XLOC_000304 NA non-coding upstream 656549 25440037 ~ 25442701 (+)
XLOC_000301 BX005016.1 non-coding upstream 979045 25120089 ~ 25120205 (+)
XLOC_000300 NA non-coding upstream 1499262 24596326 ~ 24599988 (+)
XLOC_000322 AL954695.2 non-coding downstream 447802 26551034 ~ 26554839 (+)
XLOC_000323 AL954695.3 non-coding downstream 474056 26577288 ~ 26584593 (+)
XLOC_000325 NA non-coding downstream 561457 26664689 ~ 26671210 (+)
XLOC_000327 NA non-coding downstream 636883 26740115 ~ 26741149 (+)
XLOC_000335 NA non-coding downstream 2368967 28472199 ~ 28473413 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017737 ndufb6 coding CM030131.1 CM030131.1 20626084 ~ 20627983 (-)