XLOC_003796 (CU695207.1)


Basic Information

Item Value
gene id XLOC_003796
gene name CU695207.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 543362 ~ 575786 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007309
gtgtagttCCAGAACTCGGTGCGTCTGTGGGACTTCATCGAGGAGCGCGAGCACCGGAGTGTCCCGCAGCTGGAGGACGAGGTCAATGACCTGGGGGAACTCTTCATGCAGCTGTCAGGAGCCTCAGACGCACCGCATTGatgaacacacactgaacacacacactcttcatgCAGCTGTCAGGAGCTGCAGACGCGCCGCatagatgaacacacacacacacacacacacactcagactctTCATGCAGCTGTCAGAGCCTCACACACCAGCAGTGCAGTGCCGCATTGATGAACACACACTCTAAACatgcacatgcaaacacacacactacacatggACAAGCAGCAGCACTTCCAGCATCTGTATGATgactccagctgtgtgtgtgtgtgtgtgtgtctcctctcTCTATTTTGCTGCTTTTTTTATCGTCACACTTAAAGATCACGAGGAGATCATGAAGCAGAAGTCTCGCCGCTCAGACAGTGTaaacagtgatgatgatgatgatgatgatgatgatgatgatgatgatccagtaGTTGAGGTGCTGTCTGTAGGTCACTTTATTGGTTCTGGGCTTCCTGCAATATTGCTGTGGTTATGATCAATAATAAAGCGAGCTCTTCGTCTCCACGGCCGGCTTGACTGGTGTTTAGCAGCGTTTGGATCTTGTTGCTGTGATCATTGTTTTGGACTGATATGAACTCACTGTACTGAACTCCACTCATCTGGCTTCCTCTtgaattatgatgatgatgatgatgatgatgatgatttgacACTGGGAGGAGGAGTGTAATAAACAGTTTAGTGACcgaca
>TCONS_00007310
GGAGACAGAAGCGTTTGAGagtgaaaaaaaatcttccatTCGTGACCAGGATAAAACATGTCAACGAAACAAGTGACGTGCAGgtatTTCCTCCACGGTGTGTGTCGGGAGGGCAGCAGGTGTCTGTTTTCTCACGATTTAACCACAAGTAAACCTTCCACCATCTGCAAATACTACCAGAGAGGAGCGTGTGCTTATGGAGACAGATGCAGATATGACCATATTAAACCTCCTGGTCGTGGCAGTGGAGCTCCAGCAGATCACAGTAACAGAAGCAGCAGCAGTGCAGGAGCCTCCGCACCCGGCCCCGGACCCCCGGCAAACACCAGCAAACACCTCAAAAAACCACTAGTGCTTCGAGACAAAGCTCTGTGCTCAGACAGCAGACCTCGTGTGTTCAGTGCGGAGAGTTCAGAGCTCAGTGAATGCTGGGAGCAGCGAGACGACGGCGCTCAGAAGCCGCACTCGTATCTGGAGGCCATCCGCTCTGGCCTGGACGCCTCCGCCGCCGCCGCTGCCACCGCTGGGACGTTTCCAGAGCTCCAGCAGACGTCGCCGCAGATCTGCCCGTTCCTGGCCGCAGGGCAGTGCCAGTATGGAGAAAGCTGTCCGTATCTGCATGGGGAGATGTGTGAGATCTGCAGACAGCATGTGCTGCATCCACACGACCCCGAGCAGAGAGCAGCGCACGAGAAGaagtGTATGGTGGCGTTTGAGATGGACATGGAGCGAGCGTTCGCAGTGCAGCAGAGTCAGGATAAGGTGTGTAAGATCTGTCTGGATGTGGTGTACGAGAAATCCTCTCCGTCTGAGCGGCGCTTCGGCATCCTGTCCAGCTGCGCACACACATACTGCCTGAACTGCATCCGCCAGTGGCGCTGCGTAGAGCAGTTACACAACCAGATACGCAAgtcttGTCCAGAGTGTCGTGTGGTCTCAGAGTTCGTGATTCCCAGCATCTACTGGGTGGAGGATCAGGAGCAGAAAAACCTGCTCATCGAGGAGTTCAAGTCTGGAGTCAGtaAGAAAGCCTGTAAGTACTTTGACCAGGGCAGAGGAACGTGTCCGTTTGGAGGGAAGTGTTTCTACATGCACGCTTATGCTGACGGCAGACGAGCAGAACCTGACAAACCCCGAAAACAGCTCAGCGCTGAGGGAAACGTGcggttCCAGAACTCGGTGCGTCTGTGGGACTTCATCGAGGAGCGCGAGCACCGGAGTGTCCCGCAGCTGGAGGACGAGGTCAATGACCTGGGGGAACTCTTCATGCAGCTGTCAGGAGCCTCAGACGCACCGCATTGatgaacacacactgaacacacacactcttcatgCAGCTGTCAGGAGCTGCAGACGCGCCGCatagatgaacacacacacacacacacacacactcagactctTCATGCAGCTGTCAGAGCCTCACACACCAGCAGTGCAGTGCCGCATTGATGAACACACACTCTAAACatgcacatgcaaacacacacactacacatggACAAGCAGCAGCACTTCCAGCATCTGTATGATgactccagctgtgtgtgtgtgtgtgtgtgtctcctctcTCTATTTTGCTGCTTTTTTTATCGTCACACTTAAAGATCACGAGGAGATCATGAAGCAGAAGTCTCGCCGCTCAGACAGTGTaaacagtgatgatgatgatgatgatgatgatgatgatgatgatgatccagtaGTTGAGGTGCTGTCTGTAGGTCACTTTATTGGTTCTGGGCTTCCTGCAATATTGCTGTGGTTATGATCAATAATAAAGCGAGCTCTTCGTCTCCACGGCCGGCTTGACTGGTGTTTAGCAGCGTTTGGATCTTGTTGCTGTGATCATTGTTTTGGACTGATATGAACTCACTGTACTGAACTCCACTCATCTGGCTTCCTCTtgaattatgatgatgatgatgatgatgatgatgatttgacACTGGGAGGAGGAGTGTAATAAACAGTTTAGTGACcg
>TCONS_00007312
ATgtatTTCCTCCACGGTGTGTGTCGGGAGGGCAGCAGGTGTCTGTTTTCTCACGATTTAACCACAAGTAAACCTTCCACCATCTGCAAATACTACCAGAGAGGAGCGTGTGCTTATGGAGACAGATGCAGATATGACCATATTAAACCTCCTGGTCGTGGCAGTGGAGCTCCAGCAGATCACAGTAACAGAAGCAGCAGCAGTGCAGGAGCCTCCGCACCCGGCCCCGGACCCCCGGCAAACACCAGCAAACACCTCAAAAAACCACTAGTGCTTCGAGACAAAGCTCTGTGCTCAGACAGCAGACCTCGTGTGTTCAGTGCGGAGAGTTCAGAGCTCAGTGAATGCTGGGAGCAGCGAGACGACGGCGCTCAGAAGCCGCACTCGTATCTGGAGGCCATCCGCTCTGGCCTGGACGCCTCCGCCGCCGCCGCTGCCACCGCTGGGACGTTTCCAGAGCTCCAGCAGACGTCGCCGCAGATCTGCCCGTTCCTGGCCGCAGGGCAGTGCCAGTATGGAGAAAGCTGTCCGTATCTGCATGGGGAGATGTGTGAGATCTGCAGACAGCATGTGCTGCATCCACACGACCCCGAGCAGAGAGCAGCGCACGAGAAGaagtGTATGGTGGCGTTTGAGATGGACATGGAGCGAGCGTTCGCAGTGCAGCAGAGTCAGGATAAGGTGTGTAAGATCTGTCTGGATGTGGTGTACGAGAAATCCTCTCCGTCTGAGCGGCGCTTCGGCATCCTGTCCAGCTGCGCACACACATACTGCCTGAACTGCATCCGCCAGTGGCGCTGCGTAGAGCAGTTACACAACCAGATACGCAAgtcttGTCCAGAGTGTCGTGTGGTCTCAGAGTTCGTGATTCCCAGCATCTACTGGGTGGAGGATCAGGAGCAGAAAAACCTGCTCATCGAGGAGTTCAAGTCTGGAGTCAGtaAGAAAGCCTGTAAGTACTTTGACCAGGGCAGAGGAACGTGTCCGTTTGGAGGGAAGTGTTTCTACATGCACGCTTATGCTGACGGCAGACGAGCAGAACCTGACAAACCCCGAAAACAGCTCAGCGCTGAGGGAAACGTGcggttCCAGAACTCGGTGCGTCTGTGGGACTTCATCGAGGAGCGCGAGCACCGGAGTGTCCCGCAGCTGGAGGACGAGGTCAATGACCTGGGGGAACTCTTCATGCAGCTGTCAGGAGCCTCAGACGCACCGCATTGatgaacacacactgaacacacacactcttcatgCAGCTGTCAGGAGCTGCAGACGCGCCGCatagatgaacacacacacacacacacacacacactcagactctTCATGCAGCTGTCAGGAGCCTCAGACGCACCGCATTGatgaacacacactgaacacacacactcttcatgCAGCTGTCAGGAGCTGCAGACGCGCCTCatagatgaacacacacacacacactacacacacacacacacacacactcagactctTCATGCAGCTGTCAGGAGCCTCACACACCAGCAGTGCAGCGCTGCattgatgaacacacacactctaaacatgcacatgcaaacacacacacacacactacacatggACAAGTAGCAGCACTTCCAGCATCTGTATGATGtatccaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctctctctattttgctgctttttttttatCGTCACACTTAAAGATCATGAGGAGATCATGAAGCAGAAGTCTCGCCGCTCAGACAGTGTaaacagtgatgatgatgatgatgatgatgatgatccagtaGTTGAGGTGCTGTCTGTAGGTCACTTTATTGGTTCTGGGCTTCCTGCAATATTGCTGTGGTTATGATCAATAATAAAGCGAGCTCTTCGTCTCCACGGCCGGCTTGACTGGTGTTTAGCAGCGTTTGGATCTTGTTGCTGTGATCATTGTTTTGGACTGATATGAACTCACTGTACTGAACTCCACTCATCTGGCTTCCTCTtgaattatgatgatgatgatgatgatgatgatgatgatgatttgacACTGGGAGGAGGAGTGTAATAAACAGTTTAGTGACcgacagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgattGCTCATGTAGGCTGCAACATCACAATCACAACATCAGATTGTTTGAAGACGCCTTTAAAGCTGCTGCTGAAACAGCATCATGTGTGTGCAGATCATGCTCAGTGAACACTCATGTTTATCTGAAActcaatgctgaagtcagatattctgctgtgaACATGTgcatctttgttttggtcatttaacccacccaatgccagtttagccaattgtaTT
>TCONS_00007313
ACGACCGGCGGCGGCGTGATGTAGCCGGTAATATTTTCAGGTTGCACAAAACCGTGGAGACAGAAGCGTTTGAGagtgaaaaaaaatcttccatTCGTGACCAGGATAAAACATGTCAACGAAACAAGTGACGTGCAGgtatTTCCTCCACGGTGTGTGTCGGGAGGGCAGCAGGTGTCTGTTTTCTCACGATTTAACCACAAGTAAACCTTCCACCATCTGCAAATACTACCAGAGAGGAGCGTGTGCTTATGGAGACAGATGCAGATATGACCATATTAAACCTCCTGGTCGTGGCAGTGGAGCTCCAGCAGATCACAGTAACAGAAGCAGCAGCAGTGCAGGAGCCTCCGCACCCGGCCCCGGACCCCCGGCAAACACCAGCAAACACCTCAAAAAACCACTAGTGCTTCGAGACAAAGCTCTGTGCTCAGACAGCAGACCTCGTGTGTTCAGTGCGGAGAGTTCAGAGCTCAGTGAATGCTGGGAGCAGCGAGACGACGGCGCTCAGAAGCCGCACTCGTATCTGGAGGCCATCCGCTCTGGCCTGGACGCCTCCGCCGCCGCCGCTGCCACCGCTGGGACGTTTCCAGAGCTCCAGCAGACGTCGCCGCAGATCTGCCCGTTCCTGGCCGCAGGGCAGTGCCAGTATGGAGAAAGCTGTCCGTATCTGCATGGGGAGATGTGTGAGATCTGCAGACAGCATGTGCTGCATCCACACGACCCCGAGCAGAGAGCAGCGCACGAGAAGaagtGTATGGTGGCGTTTGAGATGGACATGGAGCGAGCGTTCGCAGTGCAGCAGAGTCAGGATAAGGTGTGTAAGATCTGTCTGGATGTGGTGTACGAGAAATCCTCTCCGTCTGAGCGGCGCTTCGGCATCCTGTCCAGCTGCGCACACACATACTGCCTGAACTGCATCCGCCAGTGGCGCTGCGTAGAGCAGTTACACAACCAGATACGCAAgtcttGTCCAGAGTGTCGTGTGGTCTCAGAGTTCGTGATTCCCAGCATCTACTGGGTGGAGGATCAGGAGCAGAAAAACCTGCTCATCGAGGAGTTCAAGTCTGGAGTCAGtaAGAAAGCCTGTAAGTACTTTGACCAGGGCAGAGGAACGTGTCCGTTTGGAGGGAAGTGTTTCTACATGCACGCTTATGCTGACGGCAGACGAGCAGAACCTGACAAACCCCGAAAACAGCTCAGCGCTGAGGGAAACGTGcggttCCAGAACTCGGTGCGTCTGTGGGACTTCATCGAGGAGCGCGAGCACCGGAGTGTCCCGCAGCTGGAGGACGAGGTCAATGACCTGGGGGAACTCTTCATGCAGCTGTCAGGAGCCTCAGACGCACCGCATTGatgaacacacactgaacacacacactcttcatgCAGCTGTCAGGAGCTGCAGACGCGCCGCatagatgaacacacacacacacacacacacacactcagactctTCATGCAGCTGTCAGGAGCCTCAGACGCACCGCATTGatgaacacacactgaacacacacactcttcatgCAGCTGTCAGGAGCTGCAGACGCGCCTCatagatgaacacacacacacacactacacacacacacacacacacactcagactctTCATGCAGCTGTCAGGAGCCTCACACACCAGCAGTGCAGCGCTGCattgatgaacacacacactctaaacatgcacatgcaaacacacacacacacactacacatggACAAGTAGCAGCACTTCCAGCATCTGTATGATGtatccaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctctctctattttgctgctttttttttatCGTCACACTTAAAGATCATGAGGAGATCATGAAGCAGAAGTCTCGCCGCTCAGACAGTGTaaacagtgatgatgatgatgatgatgatgatgatccagtaGTTGAGGTGCTGTCTGTAGGTCACTTTATTGGTTCTGGGCTTCCTGCAATATTGCTGTGGTTATGATCAATAATAAAGCGAGCTCTTCGTCTCCACGGCCGGCTTGACTGGTGTTTAGCAGCGTTTGGATCTTGTTGCTGTGATCATTGTTTTGGACTGATATGAACTCACTGTACTGAACTCCACTCATCTGGCTTCCTCTtgaattatgatgatgatgatgatgatgatgatgatgatgatttgacACTGGGAGGAGGAGTGTAATAAACAGTTTAGTGACcgaca
>TCONS_00007314
ATACTGCCTGAACTGCATCCGCCAGTGGCGCTGCGTAGAGCAGTTACACAACCAGATACGCAAgtcttGTCCAGAGTGTCGTGTGGTCTCAGAGTTCGTGATTCCCAGCATCTACTGGGTGGAGGATCAGGAGCAGAAAAACCTGCTCATCGAGGAGTTCAAGTCTGGAGTCAGGTGTGTGTGTCACACTTATTCtcagaacacagtaaacacagtgagtgtatttccacacacacacacacacacacacacacactctatactCTGCTGTTTTACTGGTATATCAGACAGAGTCTCCAGCACAGGCTGATGTGAAGGGTTAACACTACACACTGATGCTCAGCAGTAAATGACGGAGCGCTCCTCTTACTCCTCATCTTGTGTCAGATATTGACTGATTCAGCACTTTCACACCTCACACATCCCCTCAGCAATGCAGAGCCTCATATCTGTGTGACATTAGCagaatgatgtgtgtgtgtgtgtgtgtgtgtttctccagtaAGAAAGCCTGTAAGTACTTTGACCAGGGCAGAGGAACGTGTCCGTTTGGAGGGAAGTGTTTCTACATGCACGCTTATGCTGACGGCAGACGAGCAGAACCTGACAAACCCCGAAAACAGCTCAGCGCTGAGGGAAACGTGcggttCCAGAACTCGGTGCGTCTGTGGGACTTCATCGAGGAGCGCGAGCACCGGAGTGTCCCGCAGCTGGAGGACGAGGTCAATGACCTGGGGGAACTCTTCATGCAGCTGTCAGGAGCCTCAGACGCACCGCATTGatgaacacacactgaacacacacactcttcatgCAGCTGTCAGGAGCTGCAGACGCGCCGCatagatgaacacacacacacacacacacacacactcagactctTCATGCAGCTGTCAGGAGCCTCAGACGCACCGCATTGatgaacacacactgaacacacacactcttcatgCAGCTGTCAGGAGCTGCAGACGCGCCTCatagatgaacacacacacacacactacacacacacacacacacac

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-020213-2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within cell differentiation and nervous system development. Is expressed in several structures, including eye; gill; gonad; integument; and liver. Orthologous to human MKRN2 (makorin ring finger protein 2).

Ensembl:

ensembl_id ENSDARG00000007630 ENSDARG00000105417

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007309 False 826 mRNA 0.48 1 543362 544187
TCONS_00007310 False 1984 mRNA 0.52 8 543365 574423
TCONS_00007312 False 2334 mRNA 0.51 8 565356 575786
TCONS_00007313 False 2211 mRNA 0.52 8 565615 574478
TCONS_00007314 True 1028 lncRNA 0.51 3 566223 570421

Neighbor

gene id symbol gene type direction distance location
XLOC_003795 cnbpb coding downstream 45508 491587 ~ 497854 (-)
XLOC_003794 isy1 coding downstream 56830 474433 ~ 486532 (-)
XLOC_003792 zgc:77375 coding downstream 70815 457423 ~ 472547 (-)
XLOC_003793 CR855375.4 coding downstream 83432 459815 ~ 459930 (-)
XLOC_003791 nuf2 coding downstream 104844 429776 ~ 438518 (-)
XLOC_003798 tsen2 coding upstream 12231 588017 ~ 596505 (-)
XLOC_003799 CABZ01069324.1 coding upstream 23654 599440 ~ 601308 (-)
XLOC_003800 pparg coding upstream 33730 609516 ~ 669558 (-)
XLOC_003801 syn2b coding upstream 99510 675296 ~ 762721 (-)
XLOC_003802 NA coding upstream 240139 815925 ~ 891674 (-)
XLOC_003938 BX324177.10 misc upstream 10763018 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 10791808 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 10794669 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 10805118 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 10808047 11383833 ~ 11384130 (-)
XLOC_003788 NA non-coding downstream 173676 369127 ~ 369686 (-)
XLOC_003787 CR855375.2 non-coding downstream 191661 349113 ~ 351701 (-)
XLOC_003781 NA non-coding downstream 348647 193460 ~ 194715 (-)
XLOC_003780 CU633745.1 non-coding downstream 352901 183570 ~ 190461 (-)
XLOC_003803 CABZ01066384.1 non-coding upstream 348009 923795 ~ 979748 (-)
XLOC_003804 NA non-coding upstream 355707 931493 ~ 985740 (-)
XLOC_003806 NA non-coding upstream 489375 1065161 ~ 1088629 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G19113 NA unknown CM030122.1 CM030122.1 50551880 ~ 50552985 (+)