RNA id: TCONS_00007310


Basic Information

Item Value
RNA id TCONS_00007310
length 1984
RNA type mRNA
GC content 0.52
exon number 8
gene id XLOC_003796
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 543362 ~ 575786 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGACAGAAGCGTTTGAGagtgaaaaaaaatcttccatTCGTGACCAGGATAAAACATGTCAACGAAACAAGTGACGTGCAGgtatTTCCTCCACGGTGTGTGTCGGGAGGGCAGCAGGTGTCTGTTTTCTCACGATTTAACCACAAGTAAACCTTCCACCATCTGCAAATACTACCAGAGAGGAGCGTGTGCTTATGGAGACAGATGCAGATATGACCATATTAAACCTCCTGGTCGTGGCAGTGGAGCTCCAGCAGATCACAGTAACAGAAGCAGCAGCAGTGCAGGAGCCTCCGCACCCGGCCCCGGACCCCCGGCAAACACCAGCAAACACCTCAAAAAACCACTAGTGCTTCGAGACAAAGCTCTGTGCTCAGACAGCAGACCTCGTGTGTTCAGTGCGGAGAGTTCAGAGCTCAGTGAATGCTGGGAGCAGCGAGACGACGGCGCTCAGAAGCCGCACTCGTATCTGGAGGCCATCCGCTCTGGCCTGGACGCCTCCGCCGCCGCCGCTGCCACCGCTGGGACGTTTCCAGAGCTCCAGCAGACGTCGCCGCAGATCTGCCCGTTCCTGGCCGCAGGGCAGTGCCAGTATGGAGAAAGCTGTCCGTATCTGCATGGGGAGATGTGTGAGATCTGCAGACAGCATGTGCTGCATCCACACGACCCCGAGCAGAGAGCAGCGCACGAGAAGaagtGTATGGTGGCGTTTGAGATGGACATGGAGCGAGCGTTCGCAGTGCAGCAGAGTCAGGATAAGGTGTGTAAGATCTGTCTGGATGTGGTGTACGAGAAATCCTCTCCGTCTGAGCGGCGCTTCGGCATCCTGTCCAGCTGCGCACACACATACTGCCTGAACTGCATCCGCCAGTGGCGCTGCGTAGAGCAGTTACACAACCAGATACGCAAgtcttGTCCAGAGTGTCGTGTGGTCTCAGAGTTCGTGATTCCCAGCATCTACTGGGTGGAGGATCAGGAGCAGAAAAACCTGCTCATCGAGGAGTTCAAGTCTGGAGTCAGtaAGAAAGCCTGTAAGTACTTTGACCAGGGCAGAGGAACGTGTCCGTTTGGAGGGAAGTGTTTCTACATGCACGCTTATGCTGACGGCAGACGAGCAGAACCTGACAAACCCCGAAAACAGCTCAGCGCTGAGGGAAACGTGcggttCCAGAACTCGGTGCGTCTGTGGGACTTCATCGAGGAGCGCGAGCACCGGAGTGTCCCGCAGCTGGAGGACGAGGTCAATGACCTGGGGGAACTCTTCATGCAGCTGTCAGGAGCCTCAGACGCACCGCATTGatgaacacacactgaacacacacactcttcatgCAGCTGTCAGGAGCTGCAGACGCGCCGCatagatgaacacacacacacacacacacacactcagactctTCATGCAGCTGTCAGAGCCTCACACACCAGCAGTGCAGTGCCGCATTGATGAACACACACTCTAAACatgcacatgcaaacacacacactacacatggACAAGCAGCAGCACTTCCAGCATCTGTATGATgactccagctgtgtgtgtgtgtgtgtgtgtctcctctcTCTATTTTGCTGCTTTTTTTATCGTCACACTTAAAGATCACGAGGAGATCATGAAGCAGAAGTCTCGCCGCTCAGACAGTGTaaacagtgatgatgatgatgatgatgatgatgatgatgatgatgatccagtaGTTGAGGTGCTGTCTGTAGGTCACTTTATTGGTTCTGGGCTTCCTGCAATATTGCTGTGGTTATGATCAATAATAAAGCGAGCTCTTCGTCTCCACGGCCGGCTTGACTGGTGTTTAGCAGCGTTTGGATCTTGTTGCTGTGATCATTGTTTTGGACTGATATGAACTCACTGTACTGAACTCCACTCATCTGGCTTCCTCTtgaattatgatgatgatgatgatgatgatgatgatttgacACTGGGAGGAGGAGTGTAATAAACAGTTTAGTGACcg

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-020213-2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within cell differentiation and nervous system development. Is expressed in several structures, including eye; gill; gonad; integument; and liver. Orthologous to human MKRN2 (makorin ring finger protein 2).

Ensembl:

ensembl_id ENSDART00000176364

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007306 lncRNA downstream 57037 483255 ~ 486328 (-) True XLOC_003794
TCONS_00008725 lncRNA downstream 173679 369127 ~ 369686 (-) True XLOC_003788
TCONS_00008439 lncRNA downstream 348650 193460 ~ 194715 (-) True XLOC_003781
TCONS_00007286 lncRNA downstream 352904 183570 ~ 190461 (-) False XLOC_003780
TCONS_00007316 lncRNA upstream 25017 599440 ~ 601303 (-) False XLOC_003799
TCONS_00007317 lncRNA upstream 25335 599758 ~ 601308 (-) True XLOC_003799
TCONS_00008726 lncRNA upstream 241502 815925 ~ 823447 (-) False XLOC_003802
TCONS_00008727 lncRNA upstream 241502 815925 ~ 843826 (-) False XLOC_003802
TCONS_00008728 lncRNA upstream 357070 931493 ~ 985740 (-) True XLOC_003804
TCONS_00007307 mRNA downstream 45511 491587 ~ 497854 (-) False XLOC_003795
TCONS_00007308 mRNA downstream 45685 492481 ~ 497680 (-) True XLOC_003795
TCONS_00007305 mRNA downstream 56833 474433 ~ 486532 (-) False XLOC_003794
TCONS_00007303 mRNA downstream 70818 457423 ~ 472547 (-) True XLOC_003792
TCONS_00007301 mRNA downstream 104847 431018 ~ 438518 (-) False XLOC_003791
TCONS_00007315 mRNA upstream 13594 588017 ~ 596505 (-) True XLOC_003798
TCONS_00007318 mRNA upstream 35093 609516 ~ 669270 (-) False XLOC_003800
TCONS_00007319 mRNA upstream 63789 638212 ~ 669558 (-) True XLOC_003800
TCONS_00007320 mRNA upstream 100873 675296 ~ 762721 (-) True XLOC_003801
TCONS_00007321 mRNA upstream 241683 816106 ~ 843811 (-) False XLOC_003802
TCONS_00007304 other downstream 83435 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 191664 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007326 other upstream 349372 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 494983 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3379300 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 5497537 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 5622853 6197276 ~ 6206589 (-) False XLOC_003884

Expression Profile

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