LOC103044865


Basic Information

Item Value
gene id LOC103044865
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 40762672 ~ 40770501 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU117259
CCACTGACCTTCAGGATCATCAGAGCTCTCAGATCTGCTGTCCTACAGGATCAGCTCAGTGCAGAAGtGAAAGACAGGGACGGACGCCAGCAGCTGATACACACACATCATCCCCTGAGCATCTGCCAGTCTCGCGCCCTTCACCACCGCGGCCCCCAGCCAGcgctctcctctgattggtcagcagGCCGGTCGGGATGGAGCGTGTGCAGAACATCACGCGTTCGGCCATCCGCAGGGCGTCCAACATCGAGGTGAACCCGCAGACCAAGCGCAACCTGCAGGACCTCTTCATCAACTTCTCCCTCATCCTCATCTGCCTGCTGCTCATCTACATCATCGTCCTGCTGATGTGATGCCCCCCGGGGGCCAACGGGCATGAACTGGACACTGGTTTaagggggggggcggggggttGGGGGGCGGAAACATTCGGGTATGTGGGCGGGATTTATTGGAGTCTATATGGAATACACTACATGTACAAATATTTTTGGACACTCTTTCAAATGAATGCTGAATTCagttactttaagttgcaccaatTGCTGACATTGCTTGTCTTGTCCCTATACTGCCCCTTTACTATCGGTATACTGCCCCAATACTGTCCCTATACTGCTTCTAAACTGTGCCTGTACTGCACTTTTAATGTCCCTATACTATCCCTCTACAGTCCCTATACTGCCCTTATACTTTCCTTATACTGTCCCTTATAATGTCCCTATACTATACCCACAATGTCCCTATACTGCTCCTTTACTGTCCCTATACTGCCTCTATACTGCCCTTATACTGTCCCTTATAATGTCCCTATACTATACCCACAATGTACCCATATTGCCCCTATGCTGTCCCTTTACTACCCCTATACTGTCCTTATACTGCCATTATACTGTCTCCCTACTGCCCCTATATGAATAGTATTTCCTGGaacagcagataaaaaaattaacatatgaCTATAGAGGGGTATTATTATATTGCAATCAAtcaacagtagagacagttactccaaaagcaaaagcatacactctttttaatacccttaattacAAAAGGAACTAAAGAAACGACTGAGTAGGTGACacaatacttttgtacttttgtctACATTGCACACATGTTGTCATTGTTTGAACATGACCTCCCTTCTcccttttttgtattgtttttgttttgttttaaagacAGTAAAGATGTTCTTCACTTG
>TU117261
AATGTCCCTATACTGCTCCTATACTATCCCTATACAGTCCCTATACTGCCCCAATACTGTCCCTATACTGCCCCTATATTATCACTATGCTATCACATATATGTCCCTATAGTGCTCCTATATTGCCCCATATCATGTTCCTATACTGTCCCAATACTCTCCCTATACTGCCCAATACTGTCCCTATATTGTCCCCATACTGCCTCTATACTGTCCATATATTGCCTATATACTGTGCCTATACTGCCCTTATACTGCACTTTTAATGTCCCTATACTATCCCTATACAGTCCCTATACTGCTCCTTTACTGTCCCTGTACTGCCTCTATACTGCCCTTATACTTTCCTTATACTGTCCCTTATAATGTCCCTATACTATACCCACAATGTCCCTATACTGCTCCTTTACTGTCCCTATACTGCCTCTATACTGCCCTTATACTGTCCTTATAATGTCCCTATACTATCCCCACAATGTCCCTATACTGCTCCTTTACTGTCCCTATACTGCCTCTATACTGCCCTTATACTGTCCCTTATAATGTCCCTTATAATGTCCCTATACTATACCCACAATGTACCCATATTGCCCCTATGCTGTCCCTTTACTACCCCTATACTGTCCTTATACTGCCATTATACTGTCTCCCTACTGCCCCTATATGAATAGTATTTCCTGGaacagcagataaaaaaattaacatatgaCTATAGAGGGGTATTATTATATTGCAATCAAtcaacagtagagacagttactccaaaagcaaaagcatacactctttttaatacccttaattacAAAAGGAACTAAAGAAACGACTGAGTAGGTGACacaatacttttgtacttttgtctACATTGCACACATGTTGTCATTGTTTGAACATGACCTCCCTTCTcccttttttgtattgtttttgttttgttttaaagacAGTAAAGATGTTCTTCACTTG
>TU117263
AATGTCCCTATACTGCTCCTATACTATCCCTATACAGTCCCTATACTGCTCCTATACTATCCCTATAATTTCAGTATACTGCCCCAATACTGTCCCTATACTGCTTCTAAACTGTGCCTGTACTGCACTTTTAATGTCCCTATACTATCCCTCTACAGTCCCTATACTGCCCTTATACTTTCCTTATACTGTCCCTTATAATGTCCCTATACTATACCCACAATGTCCCTATACTGCTCCTTTACTGTCCCTATACTGCCTCTATACTGCCCTTATACTGTCCTTATAATGTCCCTATACTATCCCCACAATGTCCCTATACTGCTCCTTTACTGTCCCTATACTGCCTCTATACTGCCCTTATACTGTCCCTTATAATGTCCCTTATAATGTCCCTATACTATACCCACAATGTACCCATATTGCCCCTATGCTGTCCCTTTACTACCCCTATACTGTCCTTATACTGCCATTATACTGTCTCCCTACTGCCCCTATATGAATAGTATTTCCTGGaacagcagataaaaaaattaacatatgaCTATAGAGGGGTATTATTATATTGCAATCAAtcaacagtagagacagttactccaaaagcaaaagcatacactctttttaatacccttaattacAAAAGGAACTAAAGAAACGACTGAGTAGGTGACacaatacttttgtacttttgtctACATTGCACACATGTTGTCATTGTTTGAACATGACCTCCCTTCTcccttttttgtattgtttttgttttgttttaaagacAGTAAAGATGTTCTTCACTTG
>TU117264
CCACTGACCTTCAGGATCATCAGAGCTCTCAGATCTGCTGTCCTACAGGATCAGCTCAGTGCAGAAGtGAAAGACAGGGACGGACGCCAGCAGCTGATACACACACATCATCCCCTGAGCATCTGCCAGTCTCGCGCCCTTCACCACCGCGGCCCCCAGCCAGcgctctcctctgattggtcagcagGCCGGTCGGGATGGAGCGTGTGCAGAACATCACGCGTTCGGCCATCCGCAGGGCGTCCAACATCGAGGTGAACCCGCAGACCAAGCGCAACCTGCAGGACCTCTTCATCAACTTCTCCCTCATCCTCATCTGCCTGCTGCTCATCTACATCATCGTCCTGCTGATGTGATGCCCCCCGGGGGCCAACG
>TU117265
CCACTGACCTTCAGGATCATCAGAGCTCTCAGATCTGCTGTCCTACAGGATCAGCTCAGTGCAGAAGtGAAAGACAGGGACGGACGCCAGCAGCTGATACACACACATCATCCCCTGAGCATCTGCCAGTCTCGCGCCCTTCACCACCGCGGCCCCCAGCCAGcgctctcctctgattggtcagcagGCCGGTCGGGATGGAGCGTGTGCAGAACATCACGCGTTCGGCCATCCGCAGGGCGTCCAACATCGAGGTGAACCCGCAGACCAAGCGCAACCTGCAGGACCTCTTCATCAACTTCTCCCTCATCCTCATCTGCCTGCTGCTCATCTACATCATCGTCCTGCTGATGTGATGCCCCCCGGGGGCCAACGGGCATGAACTGGACACTGGTTTaagggggggggcggggggttGGGGGGCGGAAACATTCGGGTATGTGGGCGGGATTTATTGGAGTCTATATGGAATACACTACATGTACAAATATTTTTGGACACTCTTTCAAATGAATGCTGAATTCagttactttaagttgcaccaatTGCTGACATTGCTTGTCTTGTCCCTATACTGCCCCTTTACTATCGGTATACTGCCCCTATACTGCTTCTATACTGTGcctatactgctctatactGCCCTTATACTGTCCCTTATAATGTCCCTATACTATACCCACAATGTCCCTATACTGCTCCTTTACTGTCCCTATACTGCCTCTATACTGCCCTTATACTGTCCCTTATAATGTCCCTATACTATACCCACAATGTACCCATATTGCCCCTATGCTGTCCCTTTACTACCCCTATACTGTCCTTATACTGCCATTATACTGTCTCCCTACTGCCCCTATATGAATAGTATTTCCTGGaacagcagataaaaaaattaacatatgaCTATAGAGGGGTATTATTATATTGCAATCAAtcaacagtagagacagttactccaaaagcaaaagcatacactctttttaatacccttaattacAAAAGGAACTAAAGAAACGACTGAGTAGGTGACacaatacttttgtacttttgtctACATTGCACACATGTTGTCATTGTTTGAACATGACCTCCCTTCTcccttttttgtattgtttttgttttgttttaaagacAGTAAAGATGTTCTTCACTTG
>XM_007233654.3
TGCTGCAGCTCCTGAGCGGCGGATTCGGCTCCACTGACCTTCAGGATCATCAGAGCTCTCAGATCTGCTGTCCTACAGGATCAGCTCAGTGCAGAAGtGAAAGACAGGGACGGACGCCAGCAGCTGATACACACACATCATCCCCTGAGCATCTGCCAGTCTCGCGCCCTTCACCACCGCGGCCCCCAGCCAGcgctctcctctgattggtcagcagGCCGGTCGGGATGGAGCGTGTGCAGAACATCACGCGTTCGGCCATCCGCAGGGCGTCCAACATCGAGGTGAACCCGCAGACCAAGCGCAACCTGCAGGACCTCTTCATCAACTTCTCCCTCATCCTCATCTGCCTGCTGCTCATCTACATCATCGTCCTGCTGATGTGATGCCCCCCGGGGGCCAACGGGCATGAACTGGACACTGGTTTaagggggggggcggggggttGGGGGGCGGAAACATTCGGGTATGTGGGCGGGATTTATTGGAGTCTATATGGAATACACTACATGTACAAATATTTTTGGACACTCTTTCAAATGAATGCTGAATTCagttactttaagttgcaccaatTGCTGACATTGCTTGTCTTGTCCCTATACTGCCCCTTTACTATCGGTATACTGCCCCTATACTGCTTCTATACTGTGccta

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU117259 True 1213 lncRNA 0.46 4 40762672 40770471
TU117261 False 960 lncRNA 0.39 2 40762672 40763806
TU117263 False 795 lncRNA 0.38 2 40762672 40763806
TU117264 False 375 TUCP 0.60 2 40764092 40770471
TU117265 False 1157 lncRNA 0.46 4 40762672 40770471
XM_007233654.3 False 657 mRNA 0.55 2 40763840 40770501

Neighbor

gene id symbol gene type direction distance location
LOC103044545 NA coding downstream 100935 40651386 ~ 40661737 (-)
LOC111193263 NA coding downstream 111655 40631203 ~ 40651017 (-)
LOC103044257 LOC103044257,LOC108443405,LOC108269439,LOC107680760 coding downstream 135735 40623224 ~ 40626937 (-)
LOC103044720 fabp7a,fabp7,LOC108443406,LOC108269522,LOC107693085,LOC107723744 coding downstream 166771 40586730 ~ 40595901 (-)
LOC103024062 NA coding downstream 309075 40448570 ~ 40453597 (-)
gnpnat1 gnpnat1,LOC107693128 coding upstream 74459 40844960 ~ 40858464 (-)
gch1 gch1,LOC107693131,LOC107723641,LOC107564951,LOC107583460,LOC107751761,LOC107680005 coding upstream 223867 40994368 ~ 41023646 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 256369 41026870 ~ 41083608 (-)
gpr137c gpr137c coding upstream 337219 41107720 ~ 41151272 (-)
LOC103035710 NA coding upstream 463344 41233845 ~ 41252428 (-)
G87034 NA non-coding downstream 36365 40725512 ~ 40726307 (-)
G87013 NA non-coding downstream 92351 40670058 ~ 40670321 (-)
G87011 NA non-coding downstream 114644 40647114 ~ 40648028 (-)
G87010 NA non-coding downstream 134760 40627367 ~ 40627912 (-)
G87006 NA non-coding downstream 183329 40579109 ~ 40579343 (-)
G87067 NA non-coding upstream 72229 40842730 ~ 40843410 (-)
G87271 NA non-coding upstream 139145 40909646 ~ 40966122 (-)
G87269 NA non-coding upstream 220267 40990768 ~ 40991617 (-)
G87301 NA non-coding upstream 350538 41121039 ~ 41121767 (-)
G87305 NA non-coding upstream 367366 41137867 ~ 41139853 (-)
LOC111193261 NA other downstream 226338 40533368 ~ 40536334 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other downstream 904103 39808130 ~ 39858569 (-)
G86432 NA other downstream 2693620 37982874 ~ 38069052 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other downstream 3661091 36588904 ~ 37101581 (-)
G85902 tfb1m other downstream 5467638 35288232 ~ 35295034 (-)
LOC103040189 NA other upstream 1002566 41773067 ~ 41804888 (-)

Expression


Co-expression Network