G103485


Basic Information

Item Value
gene id G103485
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 2392176 ~ 2401095 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU117725
CATCTAGGTGCCATGGGTCGGTTGCAGCAGACATGGGTGGGATAGTGAGGGGTGATGCTCCGCAGTTGGATTCCACCAGTTTACCCTGGTGTGAGACAGGCGCAGAACCACGGGACCTGAGTGCGGCTTTTAGAGGAGCAATGCTGTTGAACTGCACTCTGGACAGGCAACCCACAAACCCGGGTGTGTTGTATTTTTCAATAAGCACCGGATCGATGTAACCAGTTTCTGCCAGATCAGTGTTTGCTATCAGGTGTTTCTCACTTCTTCCAAAATGCCAGCCTTCTTCTCTCTCAGTGTATGTTTCTCTCCACGCTGCGGATGCCCTCCCTGTCTGTGTGTGTGTGTATATACGTCTGCAGCTGGGGCTGGGTGATCACAGACTGCAGCCCCTCTCCTGTTCCGCACTCATTGACATCTAGCTTCAACAACACCTGGAAACTGGATTCCACCATGGTCTGGATCTGGAGTCCACCTCCACTGTGATGCAGCCCCGCTGGACGATGACTGCGCCCAGAGCTGTGTAATGTTCACAGAACAGCCAATGACATCATCCATCTGTTCAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU117725 True 568 lncRNA 0.53 2 2392176 2401095

Neighbor

gene id symbol gene type direction distance location
CI01000018_02370124_02372215 NA coding upstream 19271 2370071 ~ 2372905 (+)
CI01000018_02344327_02354633 EZH2 coding upstream 36763 2344327 ~ 2355413 (+)
CI01000018_02338151_02342822 PDIA4 coding upstream 49287 2338151 ~ 2342889 (+)
CI01000018_02332183_02336865 NA coding upstream 55253 2332183 ~ 2336923 (+)
CI01000018_02327424_02330396 NA coding upstream 61216 2327424 ~ 2330960 (+)
CI01000018_02864151_02865976 NA coding downstream 463056 2864151 ~ 2865978 (+)
CI01000018_02868921_02905963 NA coding downstream 467826 2868921 ~ 2905990 (+)
CI01000018_03009909_03030542 CSPP1 coding downstream 608814 3009909 ~ 3030609 (+)
CI01000018_03144746_03157987 NA coding downstream 743559 3144654 ~ 3158243 (+)
CI01000018_03168822_03281088 PREX2 coding downstream 767727 3168822 ~ 3281088 (+)
G103483 NA non-coding upstream 6319 2384499 ~ 2385857 (+)
G103482 NA non-coding upstream 7847 2384105 ~ 2384329 (+)
G103480 NA non-coding upstream 12307 2379577 ~ 2379869 (+)
G103479 NA non-coding upstream 13706 2378254 ~ 2378470 (+)
G103478 NA non-coding upstream 14038 2377922 ~ 2378138 (+)
G103491 NA non-coding downstream 5762 2406857 ~ 2407181 (+)
G103495 NA non-coding downstream 24647 2425742 ~ 2425971 (+)
G103496 NA non-coding downstream 27639 2428734 ~ 2428954 (+)
G103497 NA non-coding downstream 28667 2429762 ~ 2429999 (+)
G103498 NA non-coding downstream 29768 2430863 ~ 2431075 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 406865 1924489 ~ 1985311 (+)
G102895 NA other upstream 806514 1582913 ~ 1585662 (+)
G104258 NA other downstream 1289994 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 1969091 4368179 ~ 4375866 (+)
G104670 NA other downstream 2354706 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 2815585 5216452 ~ 5222616 (+)
G106429 NA other downstream 4480516 6881611 ~ 6886325 (+)

Expression


Co-expression Network