G166816


Basic Information

Item Value
gene id G166816
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 3214622 ~ 3221521 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU189510
CAACCACAGACATACAGACCCATCCATTCTTAAAGCATTTATTTGGCTTAATTCAGCCACACACGATTCACAAAATACAGATATGCAGCTTCGTTACAATCTAAACTCAAGCATAATGATTATATGGTACTTCCTGTTATGCTAGATAATTAGCTGTCTATAAAACAGTATTTAGGAATATATTCAGTAATATACAGTCAATTACACTTACAATTGTTACAATGTTATTACAATTGTAATAACATTACACTGTTACAAAAAAACTTTGAATTAAAACCTTTTTTTCTGCAGTTAATGTACAATATTGTCTTTCAAAATGAAAGTACAGAAACCAACTGTCAAGAAGACATTTTAATTTTAAAACAAAACCCAATTAAAATTGTAAGTTAGACACCACTCAGAACACACATTAAGGCACAGTTGAGAATATATGGACATGTCTTGCTTGATGAAAGAAAAAAAAAAAAAAAAAAAACATACTATGCGGAAGTTATTTGAAAAGAAAAGTTTGTTTTAAATGAGCATTGCCACCCATCAGGATGTTTGTTTATGCCCAAACTAATGGGAGAATTACTGAAGCACTACTTCAGCATCCAATACAACGAGAGCTGTCTAATGATAATGCAACTCTCTCCTTCACGATATACTGAGATGCTTTACTGATTTACAGCATGAAATCAGTGCACTGTGATGGACAGTCTTCTGCTGCAATGATCATGATCCTTCACAAGATCACAAAACAGCATTTCCGATCTACAGCCAGCATCATTTCCTGTGTGTCGTAAGTACGCATGCTCACAAAAAATGTCTGTTCTAAACAAAAACCCTTTGGGTGCCTTTTTACTTGCAGTCATATTTTACATTTTACTATTGTTCCATAAATGAGATAAATTATCAATGTTTGAAAATAGAACAGCTGCATGAACAAGCAAGTTAGTCTGTATAAAAGCAATGCAAAGTGCATACATTTGGATTTTCAAGGAATGGTTTAAAACTATCTTTCATTGCATCTTTACAAACACAGGTGCTTTGAGTACATAAATCTTGTCCAGATACCAATCTCACGTATCCCAAGCTCCTTAACTCTCATTTTCTAACTCCGATTTCCGACATTCCAACTTTCTTTAAAACGTTCATATTATCATCTCCCACTTCCTGGTGCTTTTCATTGCTCCATTCATTTTCCAACAGAATCGACCATCTCAACTCACTTCTCTAGACATCTCCACGTTCATGTCCACGCATATGTTGTATTTTTCCACACAAAACCAGGCTTCACTTTACTGTATTATATTTACATGCAAAACATAAAAATGTTACTGAACTTTGTCATAATTTTCCTTCAACATTTAACGGTTACACTTTATTTTACAGTACATGTACTTACGGTGTGCTTACAGTGTTCTTACCCAAGAAAGTATTGGTAATATAAGGTACCACATGGGCTAAGGTTAGGTTTAGGGGTCGGTTCAGGGTTAGTACCTAGTTATAACCCAGTTATTGTAATTGCTATAATAAGTACATAGTATGTACATAGGGAACAGGACTGTAAAATAAGGTGCTACCCATTTAACAAATACTGCGTGGCTAACAGAAAACACATAAGCCATAGAACTCAAATGAGAGTCTAATTCACACTAAATTTTTAAGGCTCCATGTTACAGCATAAGAAAAAAAAAAAAAAAATCAGCATAAGCTATATTGATATTTAATTAATTATTTGTCTGGCTTCAAAATACCAGTCTTTGTGAATTGTGTATCAATCATCCCTAAACTTGAGCTGAAATATAGCTCTGTGAAACTGGAGATGTACGTAAAGAAACTTGTGGAAGTATTAATCCAGCCATTTAGCCAGAACCAGAGGACAAAATAGAAAGGTTTGAAAAGGAAGCTAAAATAAAACAAACTATGTTATCTGTGAAATGTGATCAACAACAAATGTGGAAATTGTGGCCGCATTGGTTTGATGAATGATGGTAATCGAATAATGAATTCTCAAATTTACAGAAGAATTATTTATTTTTTCTTTGCCAAATTTAGTTTTCTTGCTCATGCTGACAAGATCTAAAACAAAACCAGCAGCAAATAAATAATGATGTGCAGACTCCTCACAGATAGACAAGAAAACATTGAACATTTAGTCTTCATGCAAAAGACCTGCAACCAACAGCCAAACCTTTCATTTATATAATGTTTATCATGATTCTGTGTCCAGTTATGTTTGTGTTTTATTATGGTGAGAGCTATAATAAACAAAAACAATGAAGATAAACTGTCATATGTTATAATTAAACGGAAAAGTCCATAAAATGAAAGCTGAAAGTGCACAGTTCTTGTATCAATTCAGTTCTTAATTGTCGGCAAACAACAATATTTGACCGTACAATAGTACAACAGTTAGTCATTCATCTACTAGCTGTTAGTTTCGGTTTCACACTAAACCGTGTACCAGCCATGGTTGTTGTTATACAATAAAATAATTAGGTATTAGGAACAAAATATCAAGCCCGTTTTGCAAGATTTGACAAGAAAATAGAAAGAGAAATAAAATTAAAATCCAAAACAAGGTTTATGTTTTGGGGTTAAGCACAGATCAAGACGACAAATGCTGACACTGTCAGACAGGGTGCAATATATCAGCTATTTTACATGTATTAAATCATTTAATATGTATATATCACTTCTCTTGAAAACGTTAACATGTGAACATGAAAAAAAATTACTATTTCAATCTTATTTGCAGAGACTGTGCAATGGACAAAGTCTATAAAGAGTAATTTGGATGCTTTTACCCAGCAACACCCTCTGTTGGTGATCCAAAAGATCACCAGTTGAAGAGCGAGTTTTGTCCTAACGTCATGAAGTAGATCTGACTGCATCCACCCGACTGGACAGAAGCAAAAAACACCTGCAGAGAAACACAGGGGCTTTTCATTTGTAAGACATAATACCTAATGTTTTATGTTCCATGCCTTTTGACTATTCATATGCTTGTAATGCCCAGACAACCTCTTTAAAAATGGTTCTTTGTTCTGGGAGACTTTTTTTGGAGAGATTTTTTGCGTTTCTAAATGTGATATTACACAAGCATATAGAAAGATTTTCTTACTTTATCGTTTCTCTCACACAGGAACTTGAGCTTCTGAGCCTTTTTGTGCATGAAGACTCCCTCTAGACTTCCAGTCTTAGCAGATCTGAGTTCAATGGCTTTCTCCCCCCATCCCATCACTTGATTTGACTGAAGGTAGGCTGCCATAAAACGACAGAGGCGGGCATCTCCCCCCACTGCAGCACCGTCTCCTTGGTGATGTGGCCATAGGTGTCAATATAGACGCCCTCATCCTCGTAACACAGCAACAGCTCCATCCCACTGCTGCTGGGAAGGATGATGATGGCATGCGGCCGAATCAGACCCGAGATCTGAAACACACAGACATTCTGTTATAAAGAGGATAACAGTAATTTCCTTAACAAATACAGATTAATCTCCATCCAGTGTGGGCAAATAGAAGTCACAAATACATCAGTCTACTGTACTGTGTATGCCATGGATTCAAATTATCCATAGCTCCTCTCAAGTGCATTTACTGGTCGCAGCACGTAATGCAGCAGGGATCACCTGGTCGTAACATAAAAGTACTACAGCCCATTTTTATGCTAAGGCAATGTATATTAAAACAAAGGGACTGCCTATTTTCATTTAAAAGCTGCAAACATAGGCTGTATGTTTTCTTCAATAATGTGTTCATTTATGGAAGCATATTATCACATGCTGTCACAAAAATGTATCATAATAGGTATTTCTCTGCTTCATCTTCAATATGATGATTTTATTTACATAGAGCTGCGAAACCAAAAAATAAAATAAAATAATAATAATAAAGTAAATAAAATGTAAAGATATTGTTTAATATTTTGTAGGTGACTATTTTATTGAGTTTAATTCAGTAGTTTTTTTTTTATTGTATTTGGATTTCTGCAGCACATCTTACCATTATTTTAGGAATGGTTTTGGTTATTTAAATCAAATCAGCTGAAGGATTTGAGCAGTTTACATAAATTGTAACAGTATTTAGAGATAAAAATGCATGACTGGAGTATATTAACTCTGGAGTATATAAACTTTCCCTGCAATTGACAGAATCTTCTGTCATTTATGACAACACTTCCCTGCCATTGATGGAACTTTCCGGCAATCCATGTTTTCACTGTTATACACCGCTATTATGCATCTTCTGAAAGAGTACAGGATCTCCAGATCAAAACACAGGCGAAAAAGAAGCAGAAGCAAGCAATAGAAGCACTGCTTATGCACATGCTGTAGTCTTTGGAAAGAATGTGATTTTCTGGATTTCAAAATCATACAGTCATTGTTGGAAAGGGTTCAAATATGCAGAAGATGCTGGAAAATCAAAGAATTTGCAAAACATGGAGGATTTTTCTGAAGAACAGAGCTCAGTTTAACTGCTCAGGACAAACAAGGGACTCATGAACAACCATCACAAAATAAACAAACAGTCGTGGATCATCCAGGTAACGACACACAGTATTAAGGATCAAGGGTATGCAAACTTTTGAACTGGGTAATTTTTTAAAATTCAGCTTTTTTTTTGTCTTCTGGACTATATGTAAACATCTGTTATGTGAAATAGCTTATTCAGGACAGTACTAAATAAAAAAAATAACATGCAATTTTTATGATCCTTATTTTGCTAAAACGATTAACATTTTTGCAGATTCTGCAAGGGGTATGTAAACTTTCAAGCTCAACAGAATCAGACATTTCTGCTTTTTATAAAACAATTTCCTGTTATGAATTATGATACCGCTTGGTTAGTTGGTCCGTTGGGTCAGATTGCTTTCTCACCTCAACCGAACCGCCCCAGAGTTCATTTTCAACCTGGCCGAGACCACTTTGTTAAGTCAATCTCGGAGCGATTGTTTTAGTGTGGATCCGAGCGTGATTGCCATGTTCAAATAAGCCTAAATGAACAGAACTAAGGGAGAAAATGCCCCAGGTACCGAAACAAACGCTCCTCAGAGTGTGATTTTTTTTTTAAAGATCATTTTATATATACATATATACATATATATATATATATATANNN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU189510 True 5108 lncRNA 0.35 2 3214622 3221521

Neighbor

gene id symbol gene type direction distance location
CI01000032_03210864_03212974 TMEM129 coding upstream 458 3210864 ~ 3214164 (+)
CI01000032_03168377_03169554 NA coding upstream 44875 3168281 ~ 3169747 (+)
CI01000032_03142737_03156736 NA coding upstream 55833 3141742 ~ 3158789 (+)
CI01000032_03083089_03083664 NA coding upstream 130476 3081983 ~ 3084146 (+)
CI01000032_03046961_03053202 RRAGA.L, RRAGB, RRAGA, MGC78980 coding upstream 160696 3046961 ~ 3053926 (+)
CI01000032_03323107_03325296 NA coding downstream 101586 3323107 ~ 3325637 (+)
CI01000032_03326549_03327076 NA coding downstream 105028 3326549 ~ 3328864 (+)
CI01000032_03535729_03536058 NA coding downstream 314208 3535729 ~ 3536863 (+)
CI01000032_03959089_03961976 NA coding downstream 737418 3958939 ~ 3962210 (+)
CI01000032_04115597_04116265 NA coding downstream 894076 4115597 ~ 4116316 (+)
G166857 NA non-coding upstream 18518 3194034 ~ 3196104 (+)
G166861 NA non-coding upstream 104277 3110142 ~ 3110345 (+)
G166860 NA non-coding upstream 107471 3106747 ~ 3107151 (+)
G166853 NA non-coding upstream 122297 3092109 ~ 3092325 (+)
G166847 NA non-coding upstream 135526 3078641 ~ 3079096 (+)
G166819 NA non-coding downstream 54 3221575 ~ 3235567 (+)
G166974 NA non-coding downstream 220187 3441708 ~ 3441992 (+)
G167039 NA non-coding downstream 324032 3545553 ~ 3546243 (+)
G167077 NA non-coding downstream 388077 3609598 ~ 3689130 (+)
G166765 NA other upstream 257409 2956788 ~ 2957213 (+)
G166734 NA other upstream 364938 2835314 ~ 2849684 (+)
CI01000032_02773889_02774396 NA other upstream 438574 2773889 ~ 2774501 (+)
CI01000032_01698448_01701006 NA other upstream 1513334 1698448 ~ 1701288 (+)
G165570 NA other upstream 1857055 1349578 ~ 1357567 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G132585 NA non-coding NC_053124.1 CM020921.1 10882668 ~ 10883590 (-)
striped catfish (Pangasianodon hypophthalmus) G150592 NA non-coding NC_047603.1 CM018549.1 17911637 ~ 17912583 (+)