CI01000049_07735779_07751747 (TCIRG1A)


Basic Information

Item Value
gene id CI01000049_07735779_07751747
gene name TCIRG1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 7735779 ~ 7751747 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_07735779_07751747.mRNA
CAGGTCGAATTCATTGGCTGAATCACATGGCAATGACTGGAGCTGGAGTAATGAGCGGCCACGAGCTCAAAGATCCGCTGTTTACATCGCAGAGCCTCAGAAGAGAACCGACCATGAGATTAAATTGTGGATAACTTATTTTCCCAACATCGATCACCTTGGATTAATCGATCCTTGTCTATCACATACGGCTACCATGGGAAGCCTCTTCCGAAGTGAAGAGATGTGCCTGGTCCAGCTTTTCCTTCAGGCAGGTTCGGCTTACAACTGCGTCAGTGAGCTTGGAGAGTTGGGCTTAGTCGAATTCAGAGATTTGAATCCAAATGTGAATGCCTTTCAGAGGAAGTTTGTTTCAGAAGTGAGAAGATGTGAGGAGCTGGAGAAAACCTTCAAATATCTGGAGCAAGAGATCAGTCGTTCTCTCTATCCTCCTCTGAAAGGGCCTCTACCCACAGCCACGCCAATCCCATCAGCCCCACAGCCAAGAGAGCTGCTCTCCATTGAGGAGGAGAGCGAGAGACTTGCCAGAGAGCTCAAAGAGGTGTCAAGGAACAGGGACAGTCTACGTAACCAGCTGATCCAGCTCAGCCAGTACAGAGGGGTCCTGAAGCAGAGCATTTTACTACCAACCTCACAGGTCCCACCTCCAACTCTTGAGACCACAGCTCTATTGGACAGCAGGCAAGATATGCGTTTGAGCTTTGTCACTGGTGTGGTTCATCCATGGAAGGTTCCATCGTTTGAGAGGCTGCTATGGCGGGCCTGTTGTGGTTATATCATTGTAGACTTCTGGGAGATGGAGGAGAGGCTGGAAGTGCCAGACACTGGAGAGATGATTCAGTGGACTGTCTTTGTTATCTCTTTTTGGGGAGAGCAGATTGGGCAGAAAGTGCTGTCTCAGACGGAGCAGTATATGCAGCAGCTGCTGTCTCGCTGCGTGTGTCAGATGCCACAGTGGAAGATACGAGTGCAGAAATGTAAAGCTGTGCAGACGGTCCTTAACCTCTGCAGCCCTTCAGTCACAGACAAGTGTCTCATCGCAGAGGCCTGGTGCCCTGTGACCAAACTGCTTCTGCTCCAGAGCGCTCTGATAGAAGGAACGAGAAAAAGCGGTAGCAGTGTAGACTCCTTCTACAACCGTTTACCTGCACCCACATCTCCTCCAACACTCTTTATCACCAACACATTCACTTCCAGTTTCCAGAACATTGTGGATGCTTATGGTGTGGCCAGTTACAGAGAGGTTAATCCAGCTGTGTACACCATCATCACTTTTCCTTTCCTGTTTGCGGTGATGTTTGGAGATGTTGGTCATGGTTTACTCATGACGTTGGCTGCCCTGTGGATGGTTCTGGAGGAAAGAGACCCTAAGATGAGGAATAGCACTAATGAGATTTGGCGTATGCTGTTTGGTGGAAGGTATCTGATCCTTCTGATGGGGTTGTTCTCCATCTATACTGGGGCTGTTTATAATGAGTGCTTCAGTAAAGGACTTAGTCCTCTTTCCTCTGGCTGGCACCTCAAACCCATGATGCAGCACTACAACTGGAGCTTGCCTTTGTGCCCTCATTTTACACTCACTTTTGTCTTCTTTCTTCTGGGCTGGTTCAGTGATGAAACTCTGAGGAGCAACCAGTACCTCACTTTGGATCCAAACGTAACTGGAGTGTTCCAGGGACCATATCCGTTCGGCATTGACCCGATCTGGAGCCTTGCCAGTAACCACCTCAACTTCCTCAACTCCTATAAGATGAAGATGTCCATCATCATCGGGGTCATCCATATGACTTTTGGAATCTGCTTATCATTCTTCAACTACATGTACACGGGGGATGTGAGCAGCATGTTTCTGGTGTTGATTCCTGAACTAGTGTTCATGCTGTGTCTTTTTGGGTACCTTGTCTTCATGGTGGTGTTTAAATGGGTTGCGTTTGGACCTCAGGATTCAGACTGCGCTCCCAGCATCCTGATTCACTTCATTGACATGTTCGTGTTTGGTGAGAACCCAGACAACCCACCACTTTATCCAGGACAGGTGATAGTGCAGAGAATATTATTGTGTTTGGCTCTGCTAGCAGTTCCGGTGCTGTTACTTGGAAAACCGCTTTATCTGTACTTCAAGCACAGGAATAACAGGAGAACGTTACAGGAGGAGCAGCACCCCCTAGTCACAGACACCAGCTCTATAAACGCTCAACTAGGAGACCTAGAGGGAGGAGGGGGAACAGAGGAACAGGAGTTTGATTGGACAGAGGTTTTTATGCACCAGGCCATCCATACCATAGAGTACTGCCTGGGCTGCATCTCCAACACTGCATCGTACCTTCGACTTTGGGCCCTCAGCCTCGCGCATGCACAGCTGTCTGAGGTTCTCTGGGTGATGGTGATGAGAATTTCACTCTCGTGGCAAGGCTATGTGGGATCTGTGGTGCTGTCAATCATCTTCTCCATCTTCGCCATGCTCACTGTCTCTATCCTGCTCGTTATGGAGGGGCTGTCAGCCTTCCTGCACGCCCTGCGTCTGCACTGGGTGGAGTTTCAGAACAAGTTCTACAGCGGATCTGGATACAAGTTCAACCCGTTCTCCTTTGCATCAATTCAGCATCTAGAGGAAAT

Function

symbol description
tcirg1a Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 1. Orthologous to human TCIRG1 (T cell immune regulator 1, ATPase H+ transporting V0 subunit a3).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_07735779_07751747.mRNA True 2616 mRNA 0.49 20 7735779 7751747

Neighbor

gene id symbol gene type direction distance location
CI01000049_07707556_07709034 NA coding upstream 26478 7707556 ~ 7709301 (+)
CI01000049_07705032_07706755 NA coding upstream 28908 7704969 ~ 7706871 (+)
CI01000049_07690452_07701127 NA coding upstream 34028 7690391 ~ 7701751 (+)
CI01000049_07651597_07659164 NA coding upstream 76615 7651597 ~ 7659164 (+)
CI01000049_07643462_07649170 NA coding upstream 86472 7641794 ~ 7649307 (+)
CI01000049_07788293_07793674 NA coding downstream 36546 7788293 ~ 7793695 (+)
CI01000049_07799740_07805784 NA coding downstream 47993 7799740 ~ 7805784 (+)
CI01000049_07855958_07856965 NA coding downstream 103579 7855326 ~ 7857896 (+)
CI01000049_07881589_07906998 NA coding downstream 129842 7881589 ~ 7907901 (+)
CI01000049_07919606_07935459 SLC43A1B coding downstream 167859 7919606 ~ 7935585 (+)
G210077 NA non-coding upstream 13506 7721455 ~ 7722273 (+)
G210076 NA non-coding upstream 14549 7720366 ~ 7721230 (+)
CI01000049_07635510_07639493 PAI2B, PAIP2B non-coding upstream 95520 7635510 ~ 7640259 (+)
G210065 NA non-coding upstream 142978 7592023 ~ 7592801 (+)
G210142 NA non-coding downstream 62520 7814267 ~ 7814528 (+)
G210151 NA non-coding downstream 74531 7826278 ~ 7826535 (+)
G210162 NA non-coding downstream 97147 7848894 ~ 7849183 (+)
G210163 NA non-coding downstream 97454 7849201 ~ 7849497 (+)
G210164 NA non-coding downstream 97765 7849512 ~ 7850134 (+)
CI01000049_07219171_07224229 NA other upstream 438717 7218811 ~ 7224268 (+)
G209660 NA other upstream 853749 6878133 ~ 6882030 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 3259509 4473662 ~ 4476270 (+)
G208074 NA other upstream 3853568 3877396 ~ 3882211 (+)
G207888 NA other upstream 4111468 3624002 ~ 3624311 (+)
G210091 NA other downstream 122003 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 576205 8326285 ~ 8329915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001447 tcirg1a coding NC_007112.7 CM002885.2 44870880 ~ 44901163 (-)
bowfin (Amia calva) AMCG00018801 atp6v0a2,LOC106580324,LOC106584979 coding CM030135.1 CM030135.1 20706497 ~ 20723114 (+)