RNA id: TCONS_00012043


Basic Information

Item Value
RNA id TCONS_00012043
length 1400
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_006110
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32807419 ~ 32812903 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCTGATGTGTGCGGAAGTGCCGATGGTAACAGCTGGGACTCTTCGGTGCCAGCAGCCAGGATCAGATTCACAGAGCTGGATTAAAGGCGCAGGACTCTGGAGGAGACAGAGATGGACGGGAATCTGAGCCTTCATGTGGCGAATTTCAGCACtctgtttgtgtgtatggtgCTGAAGTTCCCGCAGATCTTCGTTCTGCTACGGGCCAGAGCTGCTGCGGGGGTCAGCCTCAACAGCCTCCTGCTCGAGCTGCTCGGgttcATAGTGTTCATGTCCTATCAGATGTATTATGAATATCCACCGCTCACCTACCTGGAGTATCCCATCCTCATTGCACAAGATGTCATTGTGCTCCTGTTGATCCTGCATTATAACAGAAACCTCAAGCACAGTCTCATATATGCTGCACTGTTTGTGGGTGGATGGCAGCTGCTCACAGTAAAGAAGTGGGTGATTGATTTGGCCATGAGTCTGTGTACGCTGATCAGCGGCAGCAGTAAACTGGCTCAGCTTCAGTGTTTGTGGCGCTCCAAGGATTCTGGTCAGGTCAGCTCTCTCACATGGGCTCTGGCCACATACACATGCATGGCACGGATCTTCACTACCATCATCACCACAGGAGACACACAAGTGCTGGTTCGGTTTATCGTCATGACCATTCTGAACATGTGGGTTACGGCTACGGTCATCTACTACAAACCTCAAGCAGTCAAACAGGATTAAGACAAAGGTCATGTGCTGTTTGGATTGAGCACTTTTGTTATTCCAGTGTAAGATATGGTAAAGGGATGGgttatccaaaaatgaaaatgtacccaTTTCCTCAAACTCAGGTGCTGATtcacttttatgagtttctttcattgGTTGAACACAAAAACAAGATCATTTGGCATCTATAGAACACtcaatgatgtttgctgtttgttcaaactacttatttaaaatgagctgcaacaatacaattcttaaggtttttgggGTTACATTGCAAATTACAGGGGAGTTTGGGGTGCATTGACCCCcttaattaatgcttgatcccccctgaaggacatcaaaacaaaatgtataggGGGTCAGCTCTTTAATATTAAGAAATAGCTTTCACTGATCTCTGATCTATATCTTAAATATtaagaatttaaaatgtattatacaaatatacatttgacccccCTATAATAGTCTGAAGCTGGCAGTTCTAGAGCTCCGATACACATcttaagtatttaaaaaacacatttcttgtaAAACAGGTATTTAAATCTGCacgtagagaaaaaaaaaagggtcaaattagacacataatttgtatagtctgacctacagtaacctctaaaatagtcTGTAAAtgacaaaacactgaaaactgatacatttaaaaagaaaaaaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040912-40 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC66A3 (solute carrier family 66 member 3).

Ensembl:

ensembl_id ENSDART00000085252

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013408 lncRNA upstream 698947 32105265 ~ 32108472 (+) True XLOC_006103
TCONS_00013633 lncRNA upstream 828935 31955220 ~ 31978484 (+) True XLOC_006102
TCONS_00013631 lncRNA upstream 956911 31806781 ~ 31850508 (+) False XLOC_006101
TCONS_00013634 lncRNA downstream 93740 32906643 ~ 32916926 (+) True XLOC_006112
TCONS_00013409 lncRNA downstream 292008 33104911 ~ 33105228 (+) True XLOC_006116
TCONS_00012056 lncRNA downstream 433309 33246212 ~ 33247575 (+) True XLOC_006118
TCONS_00013635 lncRNA downstream 902373 33715276 ~ 33968528 (+) True XLOC_006132
TCONS_00012079 lncRNA downstream 1882823 34695726 ~ 34698270 (+) True XLOC_006134
TCONS_00012042 mRNA upstream 11390 32740509 ~ 32796029 (+) True XLOC_006109
TCONS_00012041 mRNA upstream 11402 32740509 ~ 32796017 (+) False XLOC_006109
TCONS_00012040 mRNA upstream 165882 32636197 ~ 32641537 (+) True XLOC_006108
TCONS_00012039 mRNA upstream 350577 32454262 ~ 32456842 (+) True XLOC_006107
TCONS_00012038 mRNA upstream 353487 32446169 ~ 32453932 (+) True XLOC_006106
TCONS_00012046 mRNA downstream 211644 33024547 ~ 33034374 (+) True XLOC_006114
TCONS_00012047 mRNA downstream 242645 33055548 ~ 33065830 (+) True XLOC_006115
TCONS_00012048 mRNA downstream 304625 33117528 ~ 33123240 (+) True XLOC_006117
TCONS_00012049 mRNA downstream 433247 33246150 ~ 33251640 (+) False XLOC_006118
TCONS_00012050 mRNA downstream 433267 33246170 ~ 33248715 (+) False XLOC_006118
TCONS_00012037 other upstream 414920 32392383 ~ 32392499 (+) True XLOC_006105
TCONS_00012034 other upstream 1029893 31769821 ~ 31777526 (+) True XLOC_006100
TCONS_00011984 other upstream 1970643 30836656 ~ 30836776 (+) True XLOC_006071
TCONS_00011978 other upstream 2295696 30511607 ~ 30511723 (+) True XLOC_006065
TCONS_00011975 other upstream 2555562 30251741 ~ 30251857 (+) True XLOC_006063
TCONS_00012044 other downstream 33590 32846493 ~ 32846609 (+) True XLOC_006111
TCONS_00012045 other downstream 171751 32984654 ~ 32984769 (+) True XLOC_006113
TCONS_00012076 other downstream 1613345 34426248 ~ 34426365 (+) True XLOC_006133
TCONS_00012081 other downstream 2070343 34883246 ~ 34883370 (+) True XLOC_006136
TCONS_00012082 other downstream 2156616 34969519 ~ 34969645 (+) True XLOC_006137

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_07705100_07707005.mRNA True 1736 mRNA 0.38 4 CI01000012 7703949 ~ 7707227 (-)