RNA id: TU19611


Basic Information

Item Value
RNA id TU19611
length 249
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G17483
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8923496 ~ 8923744 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACTGTTAAAAAATTTGTGTTATTTTCAGCCTTGAACCGGGTTGTTGAGACAAACATTTTTCTGAATGAATGAGCATGAAAGAAAGCCAAAAAGCGCTACAATTATTCCTGCTCTAGTCTATCTGTGATAAGACAGCAAAGATAATAGTGTGTCAGAGACTAGACAGGACAAATTTATGATCCTTTGTCAAAGTGAAGGAGAGAAAGAAAGATTTCTGACCTGATATTGTGGGCACACACCATTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19607 lncRNA upstream 3796 8919493 ~ 8919700 (+) True G17479
TU19604 lncRNA upstream 7094 8916173 ~ 8916402 (+) True G17476
TU19603 lncRNA upstream 7389 8915870 ~ 8916107 (+) True G17475
TU19602 lncRNA upstream 7895 8915278 ~ 8915601 (+) True G17474
TU19601 lncRNA upstream 8370 8914591 ~ 8915126 (+) True G17473
TU19623 lncRNA downstream 87174 9010918 ~ 9011130 (+) True G17495
TU19484 lncRNA downstream 104367 9028111 ~ 9028519 (+) True G17359
TU19510 lncRNA downstream 104937 9028681 ~ 9028951 (+) True G17385
TU19513 lncRNA downstream 164798 9088542 ~ 9091385 (+) True G17388
TU19635 lncRNA downstream 219617 9143361 ~ 9143834 (+) True G17507
CI01000001_08841482_08845223.mRNA mRNA upstream 77863 8840862 ~ 8845633 (+) True CI01000001_08841482_08845223
CI01000001_08785318_08810381.mRNA mRNA upstream 113115 8785318 ~ 8810381 (+) True CI01000001_08785318_08810381
CI01000001_08748236_08757869.mRNA mRNA upstream 165493 8748236 ~ 8758003 (+) True CI01000001_08748236_08757869
CI01000001_08721737_08727450.mRNA mRNA upstream 195726 8721737 ~ 8727770 (+) False CI01000001_08721737_08727450
CI01000001_08714618_08721009.mRNA mRNA upstream 202314 8714618 ~ 8721182 (+) True CI01000001_08714618_08721009
CI01000001_08934325_08940532.mRNA mRNA downstream 10263 8934007 ~ 8941354 (+) True CI01000001_08934325_08940532
CI01000001_08950041_08960737.mRNA mRNA downstream 26297 8950041 ~ 8961071 (+) True CI01000001_08950041_08960737
CI01000001_08962231_08968219.mRNA mRNA downstream 38487 8962231 ~ 8968227 (+) True CI01000001_08962231_08968219
CI01000001_08971649_08984224.mRNA mRNA downstream 46801 8970545 ~ 8984239 (+) True CI01000001_08971649_08984224
CI01000001_09039724_09045754.mRNA mRNA downstream 115980 9039724 ~ 9046115 (+) True CI01000001_09039724_09045754
TU19348 other upstream 891013 8032124 ~ 8032483 (+) True G17234
TU19033 other upstream 1382910 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other upstream 1382910 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other upstream 1383036 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU17891 other upstream 3208545 5711885 ~ 5714951 (+) True G15995
TU19478 other downstream 292278 9216022 ~ 9228859 (+) True G17353
TU19479 other downstream 310719 9234463 ~ 9240677 (+) True G17354
TU19459 other downstream 494584 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 1316156 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 1333368 10257112 ~ 10260714 (+) True G18873

Expression Profile