RNA id: TU19607


Basic Information

Item Value
RNA id TU19607
length 208
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G17479
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8919493 ~ 8919700 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACCAACTAGTATGAAGCTCAAGAAAGTGCATCATTGAATACTGAAGGCGGTCTGGAGGAAGCTAGATATTTTACTTTATAAATTAAATATGGATATTTTTCTTACACAAATGCATCGCTTCGCTTCAGAAGGCCTTTATTAACCCCCTGGAGCCATATGGAGTATGTTTATGATGGATGGACGCACTTTCTTGAGCTTCATACTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19604 lncRNA upstream 3091 8916173 ~ 8916402 (+) True G17476
TU19603 lncRNA upstream 3386 8915870 ~ 8916107 (+) True G17475
TU19602 lncRNA upstream 3892 8915278 ~ 8915601 (+) True G17474
TU19601 lncRNA upstream 4367 8914591 ~ 8915126 (+) True G17473
TU19597 lncRNA upstream 7489 8911666 ~ 8912004 (+) True G17469
TU19611 lncRNA downstream 3796 8923496 ~ 8923744 (+) True G17483
TU19623 lncRNA downstream 91218 9010918 ~ 9011130 (+) True G17495
TU19484 lncRNA downstream 108411 9028111 ~ 9028519 (+) True G17359
TU19510 lncRNA downstream 108981 9028681 ~ 9028951 (+) True G17385
TU19513 lncRNA downstream 168842 9088542 ~ 9091385 (+) True G17388
CI01000001_08841482_08845223.mRNA mRNA upstream 73860 8840862 ~ 8845633 (+) True CI01000001_08841482_08845223
CI01000001_08785318_08810381.mRNA mRNA upstream 109112 8785318 ~ 8810381 (+) True CI01000001_08785318_08810381
CI01000001_08748236_08757869.mRNA mRNA upstream 161490 8748236 ~ 8758003 (+) True CI01000001_08748236_08757869
CI01000001_08721737_08727450.mRNA mRNA upstream 191723 8721737 ~ 8727770 (+) False CI01000001_08721737_08727450
CI01000001_08714618_08721009.mRNA mRNA upstream 198311 8714618 ~ 8721182 (+) True CI01000001_08714618_08721009
CI01000001_08934325_08940532.mRNA mRNA downstream 14307 8934007 ~ 8941354 (+) True CI01000001_08934325_08940532
CI01000001_08950041_08960737.mRNA mRNA downstream 30341 8950041 ~ 8961071 (+) True CI01000001_08950041_08960737
CI01000001_08962231_08968219.mRNA mRNA downstream 42531 8962231 ~ 8968227 (+) True CI01000001_08962231_08968219
CI01000001_08971649_08984224.mRNA mRNA downstream 50845 8970545 ~ 8984239 (+) True CI01000001_08971649_08984224
CI01000001_09039724_09045754.mRNA mRNA downstream 120024 9039724 ~ 9046115 (+) True CI01000001_09039724_09045754
TU19348 other upstream 887010 8032124 ~ 8032483 (+) True G17234
TU19033 other upstream 1378907 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other upstream 1378907 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other upstream 1379033 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU17891 other upstream 3204542 5711885 ~ 5714951 (+) True G15995
TU19478 other downstream 296322 9216022 ~ 9228859 (+) True G17353
TU19479 other downstream 314763 9234463 ~ 9240677 (+) True G17354
TU19459 other downstream 498628 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 1320200 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 1337412 10257112 ~ 10260714 (+) True G18873

Expression Profile