RNA id: TU19597


Basic Information

Item Value
RNA id TU19597
length 339
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G17469
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8911666 ~ 8912004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAACATGGTTTGTGTAACATTAGCAATACATTATTAGCTGTTTGATAACATGGTCAAGCAAAAGGCTAATCATATTAATTACCGTTATGTGTTCGATATTGTAAAGAGCGATACTATTGTGCAGCGTTTACCTCAGTAAGTTGACCGAGTGGATCTCTGAGCTGGCGTGAGCGAGTGGAGGCGGGGCTAATTTGCATATTCATTGATCACAAGGGTGTAGAGTTACATTCAAGCTATTTTAAGGCATGAAGAAATTTTTTTCACGGGAAAAAATATTTAAATATGTAATTTTGGTGATCAAAGATGAGTTTTAAGGGATAAAACTATTGACTATAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19578 lncRNA upstream 19553 8891865 ~ 8892113 (+) True G17450
TU19498 lncRNA upstream 55933 8846966 ~ 8855733 (+) True G17373
TU19569 lncRNA upstream 74030 8837123 ~ 8837636 (+) True G17441
TU19567 lncRNA upstream 88557 8822875 ~ 8823109 (+) True G17439
TU19551 lncRNA upstream 127479 8783905 ~ 8784187 (+) True G17423
TU19601 lncRNA downstream 2587 8914591 ~ 8915126 (+) True G17473
TU19602 lncRNA downstream 3274 8915278 ~ 8915601 (+) True G17474
TU19603 lncRNA downstream 3866 8915870 ~ 8916107 (+) True G17475
TU19604 lncRNA downstream 4169 8916173 ~ 8916402 (+) True G17476
TU19607 lncRNA downstream 7489 8919493 ~ 8919700 (+) True G17479
CI01000001_08841482_08845223.mRNA mRNA upstream 66033 8840862 ~ 8845633 (+) True CI01000001_08841482_08845223
CI01000001_08785318_08810381.mRNA mRNA upstream 101285 8785318 ~ 8810381 (+) True CI01000001_08785318_08810381
CI01000001_08748236_08757869.mRNA mRNA upstream 153663 8748236 ~ 8758003 (+) True CI01000001_08748236_08757869
CI01000001_08721737_08727450.mRNA mRNA upstream 183896 8721737 ~ 8727770 (+) False CI01000001_08721737_08727450
CI01000001_08714618_08721009.mRNA mRNA upstream 190484 8714618 ~ 8721182 (+) True CI01000001_08714618_08721009
CI01000001_08934325_08940532.mRNA mRNA downstream 22003 8934007 ~ 8941354 (+) True CI01000001_08934325_08940532
CI01000001_08950041_08960737.mRNA mRNA downstream 38037 8950041 ~ 8961071 (+) True CI01000001_08950041_08960737
CI01000001_08962231_08968219.mRNA mRNA downstream 50227 8962231 ~ 8968227 (+) True CI01000001_08962231_08968219
CI01000001_08971649_08984224.mRNA mRNA downstream 58541 8970545 ~ 8984239 (+) True CI01000001_08971649_08984224
CI01000001_09039724_09045754.mRNA mRNA downstream 127720 9039724 ~ 9046115 (+) True CI01000001_09039724_09045754
TU19348 other upstream 879183 8032124 ~ 8032483 (+) True G17234
TU19033 other upstream 1371080 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other upstream 1371080 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other upstream 1371206 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU17891 other upstream 3196715 5711885 ~ 5714951 (+) True G15995
TU19478 other downstream 304018 9216022 ~ 9228859 (+) True G17353
TU19479 other downstream 322459 9234463 ~ 9240677 (+) True G17354
TU19459 other downstream 506324 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 1327896 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 1345108 10257112 ~ 10260714 (+) True G18873

Expression Profile