RNA id: TU32348



Basic Information


Item Value
RNA id TU32348
length 604
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G28606
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7195049 ~ 7195652 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATGATGACAGAAGTTTCATTTTTGGGTTACTATCCCTTTAAGATCGCATAACCAGTCGAATACAAATAACTTCGCTAATCTTGTTATTGAACACTAACCTGATGGCGGATGTAAGATTTTTTTTTAGTAAATATAAACTTTTAATTTTGTGTTATGTTATTTTCACATTGCTAGTTGTATTCTAAGTTAAAAAAAAAATAAATAAATAAAAATAAAACATTTAGATTGGAAATGCACTAACCTTTGTAATAGTCCAAGCAAATTATATCCATGTGACTTTAATATCTACTTGGAAAACACAAGTATTACACTTACAATGGTTATTCTTGGAGCCCCCCAATGCATATTTTGCATGTCTCCTTCGTCTGACACTCCCATTTCAGGTCTTGGGTCTCTACTAATGAGCTGATGAATTGAATCAGGTGTGTGTTTGATTAAGAAGATATGCAAAATGTGCAGCGTTGGGGGGCTCCAGGAACGTGGTTGAGAACCACTGATGTATTGTGGACTACTCCTAACATTCACCCAAAGGCGCATCTGTCGGTGTTCTACTGCCCTCTTTAGGCATTATAATGCCATCATTCTCAACGACTTCTGATCGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32132 lncRNA upstream 44562 7149337 ~ 7150487 (+) True G28405
TU32323 lncRNA upstream 56819 7137566 ~ 7138230 (+) False G28583
TU32324 lncRNA upstream 56819 7137566 ~ 7138230 (+) True G28583
TU32340 lncRNA upstream 57889 7136504 ~ 7137160 (+) True G28598
TU32338 lncRNA upstream 60106 7134743 ~ 7134943 (+) True G28596
TU32376 lncRNA downstream 52896 7248548 ~ 7248777 (+) True G28634
TU32092 lncRNA downstream 58750 7254402 ~ 7255602 (+) True CI01000004_07254370_07254880
TU32133 lncRNA downstream 93989 7289641 ~ 7295398 (+) True G28406
TU32389 lncRNA downstream 101440 7297092 ~ 7297341 (+) True G28647
TU32393 lncRNA downstream 106073 7301725 ~ 7301988 (+) True G28651
CI01000004_07164273_07167923.mRNA mRNA upstream 26813 7164273 ~ 7168236 (+) True CI01000004_07164273_07167923
CI01000004_07084569_07087489.mRNA mRNA upstream 106951 7084379 ~ 7088098 (+) True CI01000004_07084569_07087489
CI01000004_07075959_07081717.mRNA mRNA upstream 113208 7074308 ~ 7081841 (+) True CI01000004_07075959_07081717
CI01000004_07043037_07053182.mRNA mRNA upstream 141308 7042393 ~ 7053741 (+) True CI01000004_07043037_07053182
CI01000004_06989955_07000066.mRNA mRNA upstream 194816 6989562 ~ 7000233 (+) True CI01000004_06989955_07000066
CI01000004_07196152_07199384.mRNA mRNA downstream 500 7196152 ~ 7199414 (+) True CI01000004_07196152_07199384
CI01000004_07249855_07250697.mRNA mRNA downstream 53939 7249591 ~ 7251433 (+) True CI01000004_07249855_07250697
CI01000004_07254370_07254880.mRNA mRNA downstream 58718 7254370 ~ 7255249 (+) False CI01000004_07254370_07254880
CI01000004_07262498_07264843.mRNA mRNA downstream 66621 7262273 ~ 7265593 (+) True CI01000004_07262498_07264843
CI01000004_07306344_07318193.mRNA mRNA downstream 110605 7306257 ~ 7318449 (+) True CI01000004_07306344_07318193
TU32079 other upstream 620628 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 692962 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 1462048 5732589 ~ 5733001 (+) True G28165
TU31417 other upstream 1821246 5372825 ~ 5373803 (+) False G27805
TU32454 other downstream 459120 7654772 ~ 7654879 (+) True G28706
TU32590 other downstream 1238053 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 1403583 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 1780786 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 1780786 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033

Expression Profile