RNA id: TU32389


Basic Information

Item Value
RNA id TU32389
length 250
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G28647
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7297092 ~ 7297341 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTGAACTGAACGCTGATAACACGCTGGAAGGTCTCCCTCCTCTTTAGCCCGGAGGACACGGCGTCCGTGATTTCCAACAAGAATGTCAAATTTGGACTCGTCTGACCATAGAACACTTTTCCACTTTGAAACAGTCCATTTTAAATGAGCCTTGGCCCACAAGACACGACGGCACTTCTGGAATATGTTCACATATGGCTTCCTTTTTGCATGATAGAGCTTTAGTTGGCATCTGCAGATGGCACGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32133 lncRNA upstream 1694 7289641 ~ 7295398 (+) True G28406
TU32092 lncRNA upstream 41490 7254402 ~ 7255602 (+) True CI01000004_07254370_07254880
TU32376 lncRNA upstream 48315 7248548 ~ 7248777 (+) True G28634
TU32348 lncRNA upstream 101440 7195049 ~ 7195652 (+) True G28606
TU32132 lncRNA upstream 146605 7149337 ~ 7150487 (+) True G28405
TU32393 lncRNA downstream 4384 7301725 ~ 7301988 (+) True G28651
TU32399 lncRNA downstream 54664 7352005 ~ 7352230 (+) True G28657
TU32159 lncRNA downstream 82725 7380066 ~ 7380596 (+) True G28432
TU32150 lncRNA downstream 83415 7380756 ~ 7382325 (+) True G28423
TU32099 lncRNA downstream 87703 7385044 ~ 7387399 (+) True G28372
CI01000004_07262498_07264843.mRNA mRNA upstream 31499 7262273 ~ 7265593 (+) True CI01000004_07262498_07264843
CI01000004_07254370_07254880.mRNA mRNA upstream 41843 7254370 ~ 7255249 (+) False CI01000004_07254370_07254880
CI01000004_07249855_07250697.mRNA mRNA upstream 45659 7249591 ~ 7251433 (+) True CI01000004_07249855_07250697
CI01000004_07196152_07199384.mRNA mRNA upstream 97678 7196152 ~ 7199414 (+) True CI01000004_07196152_07199384
CI01000004_07164273_07167923.mRNA mRNA upstream 128856 7164273 ~ 7168236 (+) True CI01000004_07164273_07167923
CI01000004_07306344_07318193.mRNA mRNA downstream 8916 7306257 ~ 7318449 (+) True CI01000004_07306344_07318193
CI01000004_07319769_07320274.mRNA mRNA downstream 21815 7319156 ~ 7320711 (+) True CI01000004_07319769_07320274
CI01000004_07322380_07326368.mRNA mRNA downstream 24925 7322266 ~ 7326548 (+) True CI01000004_07322380_07326368
CI01000004_07360794_07364249.mRNA mRNA downstream 62431 7359772 ~ 7364599 (+) True CI01000004_07360794_07364249
CI01000004_07366683_07372144.mRNA mRNA downstream 69342 7366683 ~ 7372438 (+) True CI01000004_07366683_07372144
TU32079 other upstream 722671 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 795005 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 1564091 5732589 ~ 5733001 (+) True G28165
TU31417 other upstream 1923289 5372825 ~ 5373803 (+) False G27805
TU32454 other downstream 357431 7654772 ~ 7654879 (+) True G28706
TU32590 other downstream 1136364 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 1301894 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 1679097 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 1679097 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033

Expression Profile