RNA id: TU32399


Basic Information

Item Value
RNA id TU32399
length 226
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G28657
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7352005 ~ 7352230 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAAAGCAACATAAGAGAATGAATGTGTAAATATGTCACATTTATATAGTGAATGATGTTGAGGAAGATGACAATGAAACAGCTAATTATGTGGGTCATCTCTCTTTTGGTGCTTTTATGACTTACTATTAATTATTAAAACCAAGATAAAGCTTTTTTATAAGAATAAAAAATGAAGGGCATTTTGTATTACAAAAGATTTTTTTGTGTGTGTGTGGTTTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32393 lncRNA upstream 50017 7301725 ~ 7301988 (+) True G28651
TU32389 lncRNA upstream 54664 7297092 ~ 7297341 (+) True G28647
TU32133 lncRNA upstream 56607 7289641 ~ 7295398 (+) True G28406
TU32092 lncRNA upstream 96403 7254402 ~ 7255602 (+) True CI01000004_07254370_07254880
TU32376 lncRNA upstream 103228 7248548 ~ 7248777 (+) True G28634
TU32159 lncRNA downstream 27836 7380066 ~ 7380596 (+) True G28432
TU32150 lncRNA downstream 28526 7380756 ~ 7382325 (+) True G28423
TU32099 lncRNA downstream 32814 7385044 ~ 7387399 (+) True G28372
TU32106 lncRNA downstream 35351 7387581 ~ 7387841 (+) True G28379
TU32426 lncRNA downstream 75012 7427242 ~ 7428762 (+) True G28682
CI01000004_07322380_07326368.mRNA mRNA upstream 25457 7322266 ~ 7326548 (+) True CI01000004_07322380_07326368
CI01000004_07319769_07320274.mRNA mRNA upstream 31294 7319156 ~ 7320711 (+) True CI01000004_07319769_07320274
CI01000004_07306344_07318193.mRNA mRNA upstream 33556 7306257 ~ 7318449 (+) True CI01000004_07306344_07318193
CI01000004_07262498_07264843.mRNA mRNA upstream 86412 7262273 ~ 7265593 (+) True CI01000004_07262498_07264843
CI01000004_07254370_07254880.mRNA mRNA upstream 96756 7254370 ~ 7255249 (+) False CI01000004_07254370_07254880
CI01000004_07360794_07364249.mRNA mRNA downstream 7542 7359772 ~ 7364599 (+) True CI01000004_07360794_07364249
CI01000004_07366683_07372144.mRNA mRNA downstream 14453 7366683 ~ 7372438 (+) True CI01000004_07366683_07372144
CI01000004_07375432_07378296.mRNA mRNA downstream 23202 7375432 ~ 7378687 (+) True CI01000004_07375432_07378296
CI01000004_07515025_07559926.mRNA mRNA downstream 162795 7515025 ~ 7560401 (+) True CI01000004_07515025_07559926
CI01000004_07568950_07581744.mRNA mRNA downstream 216720 7568950 ~ 7582672 (+) True CI01000004_07568950_07581744
TU32079 other upstream 777584 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 849918 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 1619004 5732589 ~ 5733001 (+) True G28165
TU31417 other upstream 1978202 5372825 ~ 5373803 (+) False G27805
TU32454 other downstream 302542 7654772 ~ 7654879 (+) True G28706
TU32590 other downstream 1081475 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 1247005 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 1624208 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 1624208 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033

Expression Profile