RNA id: TU42870


Basic Information

Item Value
RNA id TU42870
length 392
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G37798
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 2907168 ~ 2907559 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCCATATTGACAGAAAAACACAGAATTGTTGACATTTTTGCAGATTTATTAAAAAAGAAAAACTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTCAGTATTTAGTAGAAGCACCCTTTTGATCTAATACAGCCATGAGTCTTTTTGGGAAAGATGCAACAAGTTTTTCACATCTGGATTTGGGGATCCTCTGCCATTCCTCCTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACGTTGGTGGATAGCCATTTTTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGGGCCATTCAAGAACAGTCACGGAGTTGTTGTGAAGCCACTCCTTCGTTATTTTAGCTGTGTGCTTAGGGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42798 lncRNA downstream 25425 2845604 ~ 2881743 (-) True G37739
TU42802 lncRNA downstream 32056 2867131 ~ 2875112 (-) True G37742
TU42817 lncRNA downstream 115751 2791161 ~ 2791417 (-) True G37755
TU42778 lncRNA downstream 148612 2758264 ~ 2758556 (-) True G37730
TU42777 lncRNA downstream 150329 2756624 ~ 2756839 (-) True G37729
TU42871 lncRNA upstream 10739 2918298 ~ 2918650 (-) True G37799
TU42876 lncRNA upstream 35385 2942944 ~ 2946590 (-) True G37804
TU42894 lncRNA upstream 102040 3009599 ~ 3011944 (-) True G37815
TU42948 lncRNA upstream 183473 3091032 ~ 3091255 (-) True G37861
TU42954 lncRNA upstream 209735 3117294 ~ 3144925 (-) True G37867
CI01000005_02885300_02890664.mRNA mRNA downstream 16504 2884930 ~ 2890664 (-) True CI01000005_02885300_02890664
CI01000005_02761667_02765877.mRNA mRNA downstream 140828 2761272 ~ 2766340 (-) True CI01000005_02761667_02765877
CI01000005_02669952_02699226.mRNA mRNA downstream 207942 2669114 ~ 2699226 (-) True CI01000005_02669952_02699226
CI01000005_02619187_02639895.mRNA mRNA downstream 267273 2618085 ~ 2639895 (-) True CI01000005_02619187_02639895
CI01000005_02403966_02437498.mRNA mRNA downstream 469629 2403955 ~ 2437539 (-) True CI01000005_02403966_02437498
CI01000005_02940731_02974087.mRNA mRNA upstream 32698 2940257 ~ 2974171 (-) False CI01000005_02940731_02974087
CI01000005_03044395_03046540.mRNA mRNA upstream 136804 3044363 ~ 3046804 (-) True CI01000005_03044395_03046540
CI01000005_03050086_03051694.mRNA mRNA upstream 142527 3050086 ~ 3051694 (-) True CI01000005_03050086_03051694
CI01000005_03163226_03166158.mRNA mRNA upstream 254559 3162118 ~ 3166158 (-) True CI01000005_03163226_03166158
CI01000005_03175712_03183326.mRNA mRNA upstream 268023 3175582 ~ 3183326 (-) True CI01000005_03175712_03183326
TU41481 other downstream 1017892 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 1017892 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41598 other downstream 1242889 1663267 ~ 1664279 (-) False G36628
TU41601 other downstream 1242889 1663267 ~ 1664279 (-) True G36628
TU40958 other downstream 1863496 1021295 ~ 1043672 (-) True G36049
TU43637 other upstream 1297286 4204845 ~ 4206208 (-) True G38510
TU43542 other upstream 1473679 4381238 ~ 4401110 (-) True G38415
TU44762 other upstream 2926233 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 2926233 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 3573130 6480689 ~ 6483489 (-) True G40190

Expression Profile