RNA id: CI01000006_06192438_06193928.mRNA


Basic Information

Item Value
RNA id CI01000006_06192438_06193928.mRNA
length 741
RNA type mRNA
GC content 0.48
exon number 5
gene id CI01000006_06192438_06193928
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6192438 ~ 6194004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTATCCAATGCCACCAAATATAAGCATCAGTAGGATCATTTACAACAGTCGTCAACGGACAGATGTTGACCTAGAGTGGCAGCTCCAGACTGATGGTGACCTCACCGGCTTCTTTATAGAACGCCAGAGGCTCCCTGAACCTGTGAAGAAAAGAAACGGTGGTCTTCCCTGGCAGAAATTGGTAGATCTGGAACCTGATTCCCGAAGCTTCCAAATCAGCAATCTGGATCCCACAGGAACCTATGCATTTCGCATTACTGCCATCAACCATCGCACCATTGGAAACCCTTCAGAGACAAAGAGCCCAGCCGACCCTCCATTCAATGCCTACCCAGCTGTGATCGGGGCAGCCATTGGGGGCATGATCATAGCCACAATAATCACTGTACTGCTCTTCATGTATGTGGTACGGAACCGCAACAATAACCCACGGCTTCATGACTTGATATTTGGAAGGCAGAATAGCCAGTCTAGAGAGAACATTAACTTCCCTGAAGATGAGGTTCCTGGAACAGCAGAAGGGGAGAATGGTACAGGACAGCCAAGTTCATCAGCTAGTCCAGCAGCATCAATGGCACTGCCAAGGCCAACCGCAACACCTACAAACCTTCCCCCTGGCGAGGAGCCAGTCAACGTAACTATTACTGTCATGGCCTCAAGCTAAAGACAAGGCTGATCATAATCATGTTTGTTACCATAAATTTACTACTGGGGGAATCAGAAACACATTCTCATCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49847 lncRNA upstream 37711 6151873 ~ 6154727 (+) True G43908
TU49936 lncRNA upstream 71703 6120358 ~ 6120735 (+) True G43990
TU49934 lncRNA upstream 82032 6110166 ~ 6110406 (+) True G43988
TU49910 lncRNA upstream 119732 6072397 ~ 6072706 (+) True G43970
TU49826 lncRNA upstream 388277 5792917 ~ 5804161 (+) True G43887
TU49843 lncRNA downstream 165 6194169 ~ 6199969 (+) True G43904
TU49956 lncRNA downstream 78934 6272938 ~ 6273227 (+) True G44009
TU49957 lncRNA downstream 81001 6275005 ~ 6275234 (+) True G44010
TU49959 lncRNA downstream 91644 6285648 ~ 6285875 (+) True G44012
TU49986 lncRNA downstream 193711 6387715 ~ 6390438 (+) True G44035
CI01000006_06171151_06179449.mRNA mRNA upstream 11063 6171151 ~ 6181375 (+) True CI01000006_06171151_06179449
CI01000006_06146799_06148260.mRNA mRNA upstream 44033 6146729 ~ 6148405 (+) True CI01000006_06146799_06148260
CI01000006_06142449_06142925.mRNA mRNA upstream 49370 6142299 ~ 6143068 (+) True CI01000006_06142449_06142925
CI01000006_06136379_06136891.mRNA mRNA upstream 55181 6135816 ~ 6137257 (+) True CI01000006_06136379_06136891
CI01000006_06122278_06122736.mRNA mRNA upstream 69687 6122079 ~ 6122751 (+) False CI01000006_06122278_06122736
CI01000006_06201072_06204390.mRNA mRNA downstream 7068 6201072 ~ 6204695 (+) True CI01000006_06201072_06204390
CI01000006_06225846_06258303.mRNA mRNA downstream 31842 6225846 ~ 6258515 (+) True CI01000006_06225846_06258303
CI01000006_06267132_06269409.mRNA mRNA downstream 73128 6267132 ~ 6270057 (+) True CI01000006_06267132_06269409
CI01000006_06289413_06296642.mRNA mRNA downstream 95295 6289299 ~ 6297106 (+) True CI01000006_06289413_06296642
CI01000006_06304760_06308641.mRNA mRNA downstream 110175 6304179 ~ 6309263 (+) True CI01000006_06304760_06308641
TU49812 other upstream 63763 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 82850 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 420663 5770089 ~ 5771775 (+) True G43896
TU47686 other upstream 1068289 5117206 ~ 5124149 (+) True G41996
TU47110 other upstream 2456460 3734098 ~ 3734202 (+) True G41496
TU50906 other downstream 972785 7169829 ~ 7170534 (+) True G44782
TU51004 other downstream 1162348 7356352 ~ 7387884 (+) True G44872
TU51341 other downstream 1427987 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 1689863 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 1825338 8019342 ~ 8021951 (+) True G45336

Expression Profile