RNA id: TU49956


Basic Information

Item Value
RNA id TU49956
length 290
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G44009
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6272938 ~ 6273227 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACACCTAATGAACACTGTACCTGCCCAGTCCCTTGATGCCTGCGGACCCTCGTGCCAAACACTGCAGCCTCAGTCTCTCAATGGGGTCTGAACAATCCGACAGCTGCTTCTTGGCACTGATTGCCATCTCTCGGTCATGTCGCGATGTACCTGCCATCCTATACCTATCTGATCTGAAGGTGACAAGAGTGATTTTTAGGCTTATTTATGTGGGTGCACTCTTAAAAATAAAGGTTCTTTATTAGTATTGATGGTTCCATGAGATGGATTGGCATCCATGGAACCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49843 lncRNA upstream 72969 6194169 ~ 6199969 (+) True G43904
TU49847 lncRNA upstream 118211 6151873 ~ 6154727 (+) True G43908
TU49936 lncRNA upstream 152203 6120358 ~ 6120735 (+) True G43990
TU49934 lncRNA upstream 162532 6110166 ~ 6110406 (+) True G43988
TU49910 lncRNA upstream 200232 6072397 ~ 6072706 (+) True G43970
TU49957 lncRNA downstream 1778 6275005 ~ 6275234 (+) True G44010
TU49959 lncRNA downstream 12421 6285648 ~ 6285875 (+) True G44012
TU49986 lncRNA downstream 114488 6387715 ~ 6390438 (+) True G44035
TU50014 lncRNA downstream 148703 6421930 ~ 6424506 (+) True G44053
TU50036 lncRNA downstream 198959 6472186 ~ 6472522 (+) True G44072
CI01000006_06267132_06269409.mRNA mRNA upstream 2881 6267132 ~ 6270057 (+) True CI01000006_06267132_06269409
CI01000006_06225846_06258303.mRNA mRNA upstream 14423 6225846 ~ 6258515 (+) True CI01000006_06225846_06258303
CI01000006_06201072_06204390.mRNA mRNA upstream 68243 6201072 ~ 6204695 (+) True CI01000006_06201072_06204390
CI01000006_06192438_06193928.mRNA mRNA upstream 78934 6192438 ~ 6194004 (+) True CI01000006_06192438_06193928
CI01000006_06171151_06179449.mRNA mRNA upstream 91563 6171151 ~ 6181375 (+) True CI01000006_06171151_06179449
CI01000006_06289413_06296642.mRNA mRNA downstream 16072 6289299 ~ 6297106 (+) True CI01000006_06289413_06296642
CI01000006_06304760_06308641.mRNA mRNA downstream 30952 6304179 ~ 6309263 (+) True CI01000006_06304760_06308641
CI01000006_06319924_06332207.mRNA mRNA downstream 46697 6319924 ~ 6332207 (+) True CI01000006_06319924_06332207
CI01000006_06432698_06437087.mRNA mRNA downstream 158869 6432096 ~ 6437592 (+) True CI01000006_06432698_06437087
CI01000006_06438579_06447777.mRNA mRNA downstream 165352 6438579 ~ 6449161 (+) True CI01000006_06438579_06447777
TU49812 other upstream 144263 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 163350 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 501163 5770089 ~ 5771775 (+) True G43896
TU47686 other upstream 1148789 5117206 ~ 5124149 (+) True G41996
TU47110 other upstream 2536960 3734098 ~ 3734202 (+) True G41496
TU50906 other downstream 893562 7169829 ~ 7170534 (+) True G44782
TU51004 other downstream 1083125 7356352 ~ 7387884 (+) True G44872
TU51341 other downstream 1348764 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 1610640 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 1746115 8019342 ~ 8021951 (+) True G45336

Expression Profile