RNA id: TU58522


Basic Information

Item Value
RNA id TU58522
length 233
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G51358
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2368182 ~ 2368414 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGAAGTTCGCTATTTTACTTTATAAAGTTTTAAATAAGGATAATTGTCCTACACAAATGCATTGATTAGCTTCAGAAGGCCATTATTAACCCCCTGGAGTCGTATGGATTCTTTTTCTTTTTCTTTTTTTTTGTCTTCAGAATTTGGGTTATCATTCACAACCATTATAAACCTTGGAGGACTAAGGATATTTTTAAATATATCTCCGATTGTGTTCGTCTGAAACAAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58409 lncRNA upstream 5011 2357933 ~ 2363171 (+) True G51265
TU58399 lncRNA upstream 6099 2242709 ~ 2362083 (+) False G51265
TU58400 lncRNA upstream 6099 2242709 ~ 2362083 (+) False G51265
TU58398 lncRNA upstream 6099 2329539 ~ 2362083 (+) False G51265
TU58402 lncRNA upstream 6099 2329539 ~ 2362083 (+) False G51265
TU58424 lncRNA downstream 31364 2399778 ~ 2400894 (+) True G51270
TU58426 lncRNA downstream 32619 2401033 ~ 2401367 (+) True G51272
TU58515 lncRNA downstream 47286 2415700 ~ 2425283 (+) True G51354
TU58532 lncRNA downstream 59708 2428122 ~ 2428322 (+) True G51368
TU58551 lncRNA downstream 186325 2554739 ~ 2592079 (+) False G51384
CI01000009_02284485_02285584.mRNA mRNA upstream 82053 2284485 ~ 2286129 (+) True CI01000009_02284485_02285584
CI01000009_02233367_02235148.mRNA mRNA upstream 132389 2233367 ~ 2235793 (+) True CI01000009_02233367_02235148
CI01000009_02028234_02100154.mRNA mRNA upstream 268028 2028234 ~ 2100154 (+) True CI01000009_02028234_02100154
CI01000009_01993176_01999494.mRNA mRNA upstream 368309 1993176 ~ 1999873 (+) True CI01000009_01993176_01999494
CI01000009_01990700_01991267.mRNA mRNA upstream 376795 1990700 ~ 1991387 (+) True CI01000009_01990700_01991267
CI01000009_02375481_02385887.mRNA mRNA downstream 6662 2375076 ~ 2386001 (+) True CI01000009_02375481_02385887
CI01000009_02398010_02399639.mRNA mRNA downstream 27651 2396065 ~ 2399752 (+) True CI01000009_02398010_02399639
CI01000009_02426085_02433745.mRNA mRNA downstream 57161 2425575 ~ 2433795 (+) True CI01000009_02426085_02433745
CI01000009_02449805_02450173.mRNA mRNA downstream 79583 2447997 ~ 2450356 (+) True CI01000009_02449805_02450173
CI01000009_02479541_02488142.mRNA mRNA downstream 111127 2479541 ~ 2488759 (+) True CI01000009_02479541_02488142
TU58428 other upstream 17696 2255099 ~ 2350486 (+) True G51274
TU58306 other upstream 466756 1894235 ~ 1894364 (+) True G51182
TU58233 other upstream 686216 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 929827 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 1597949 769841 ~ 770233 (+) True G50920
TU58708 other downstream 693619 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 834358 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 834358 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58749 other downstream 834358 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58750 other downstream 834358 3202772 ~ 3207486 (+) False CI01000009_03202999_03207060

Expression Profile