RNA id: TU117739


Basic Information

Item Value
RNA id TU117739
length 325
lncRNA type intronic
GC content 0.44
exon number 1
gene id G103491
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 2406857 ~ 2407181 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTGGTGTATCGAGAGCTATATTATCCAGGGTAATGTAGGCATTTCACCACGTAGGACGAACCACATCCAACAAGACTAACTGTCGACTCAAGAGGAAGCTGAATGAAAGTATTGTCCAGGTACTAACCTGGATTGTATCCAAAAAACATAAAACACAGCTGCCTAACTCACTGCAGAATTAAATGTGCACCTCGACTCTCCTGTTTCCACCAAAACTGTTTGTCAGGAGCTCCACAGAAACAATATTCATGGTTGGGATGACGTTTGGTCACTCGTGCTACTTCCAAATGACGGGTAACACCCTGACTGTTGTATGCCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117725 lncRNA upstream 5762 2392176 ~ 2401095 (+) True G103485
TU117719 lncRNA upstream 21000 2384499 ~ 2385857 (+) True G103483
TU117718 lncRNA upstream 22528 2384105 ~ 2384329 (+) True G103482
TU117714 lncRNA upstream 26988 2379577 ~ 2379869 (+) True G103480
TU117713 lncRNA upstream 28387 2378254 ~ 2378470 (+) True G103479
TU117743 lncRNA downstream 18561 2425742 ~ 2425971 (+) True G103495
TU117744 lncRNA downstream 21553 2428734 ~ 2428954 (+) True G103496
TU117745 lncRNA downstream 22581 2429762 ~ 2429999 (+) True G103497
TU117746 lncRNA downstream 23682 2430863 ~ 2431075 (+) True G103498
TU117748 lncRNA downstream 30121 2437302 ~ 2437705 (+) True G103500
CI01000018_02370124_02372215.mRNA mRNA upstream 33952 2370071 ~ 2372905 (+) True CI01000018_02370124_02372215
CI01000018_02344327_02354633.mRNA mRNA upstream 51444 2344327 ~ 2355413 (+) True CI01000018_02344327_02354633
CI01000018_02338151_02342822.mRNA mRNA upstream 63968 2338151 ~ 2342889 (+) True CI01000018_02338151_02342822
CI01000018_02332183_02336865.mRNA mRNA upstream 69934 2332183 ~ 2336923 (+) True CI01000018_02332183_02336865
CI01000018_02327424_02330396.mRNA mRNA upstream 75897 2327424 ~ 2330960 (+) True CI01000018_02327424_02330396
CI01000018_02864151_02865976.mRNA mRNA downstream 456970 2864151 ~ 2865978 (+) True CI01000018_02864151_02865976
CI01000018_02868921_02905963.mRNA mRNA downstream 461740 2868921 ~ 2905990 (+) True CI01000018_02868921_02905963
CI01000018_03009909_03030542.mRNA mRNA downstream 602728 3009909 ~ 3030609 (+) True CI01000018_03009909_03030542
CI01000018_03144746_03157987.mRNA mRNA downstream 737473 3144654 ~ 3158243 (+) True CI01000018_03144746_03157987
CI01000018_03168822_03281088.mRNA mRNA downstream 761641 3168822 ~ 3281088 (+) True CI01000018_03168822_03281088
TU117572 other upstream 421546 1969252 ~ 1985311 (+) True CI01000018_01924489_01985310
TU117055 other upstream 821195 1582913 ~ 1585662 (+) True G102895
TU118573 other downstream 1283908 3691089 ~ 3691519 (+) True G104258
TU118875 other downstream 1963005 4370186 ~ 4373412 (+) True CI01000018_04368179_04375192
TU118997 other downstream 2348620 4755801 ~ 4759768 (+) True G104670
TU119087 other downstream 2809499 5216680 ~ 5216958 (+) False G104753
TU120967 other downstream 4474430 6881611 ~ 6886325 (+) True G106429

Expression Profile