RNA id: TU173999


Basic Information

Item Value
RNA id TU173999
length 758
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G153213
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2672426 ~ 2673427 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAACTTATTGTCCCTTGTCAGTCCCACTGTCCCTCCTCAGTCTATTTCCCAACCCTCAACCATTCTGGCTACCCAATCTCTGCTGTCTTCCATCAGCCCCTCTGTTTCTCCTCTGCCTACTCTCAGTGGCACGAATCCACCTTGGGCCTTCAGTGTGCCAGCTCCACCTGGAAGTGGGAACACCAAGGCTCCGATTCGGCCTCTGATCTCGTCACTCCACTTTGGCCCATCGCCCTGATTCCTTCGCTCCTTCCTCCCTCAGCTCCAGCAAGGACCGTCGAGCATTCGGCTCCACCGGGCTCCTTCAGTACATCAGCTGCACCTGGGTCAGACGCCGCCAGCACATCGCCACGGACTTGTGGGTTGTTCACTATGCTCCGACCCTCCACCCCTACGGCTCAGTTTGCTCCGCCTTCCCTCAGACTCCGCCGCTGCCCTCAGTCGCTCCAGTTCCTCCTCAGCCCTCCAGTACCCTGCTTCCACCTCGGGGGGTCAACGCTGCTGCTCAGTCACGGCTGCCTAAGCCTCTAGTGTCGTTCCGCTCCATCGGCTCTCTGTCTGCACGGTGGGTCCCACATCCATCGGCTTCCTTGCCTCCGCTTGTCTCCAGGTTGGCATTGAGACCCTCACCACCTTAGCTCCTCCCTCCATCAACGCCGCCGTGGGACGCCATCCTGGCTGTGGCCTGGGTAGTCATCTGGCTCTTCTCGCTCGTTGCCACTAACTGGATCATTCCTTCACCTAAACCACCCTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173983 lncRNA downstream 27144 2644979 ~ 2645282 (-) True G153198
TU173980 lncRNA downstream 31317 2640903 ~ 2641109 (-) True G153195
TU173977 lncRNA downstream 34780 2637282 ~ 2637646 (-) True G153192
TU173968 lncRNA downstream 51057 2620870 ~ 2621369 (-) True G153183
TU173966 lncRNA downstream 53476 2618715 ~ 2618950 (-) True G153181
TU174030 lncRNA upstream 45024 2718451 ~ 2718658 (-) True G153240
TU174033 lncRNA upstream 48404 2721831 ~ 2722141 (-) True G153243
TU174034 lncRNA upstream 48870 2722297 ~ 2722593 (-) True G153244
TU174035 lncRNA upstream 50181 2723608 ~ 2723840 (-) True G153245
TU174038 lncRNA upstream 52708 2726135 ~ 2726424 (-) True G153248
CI01000029_02593889_02603627.mRNA mRNA downstream 68799 2593391 ~ 2603627 (-) True CI01000029_02593889_02603627
CI01000029_02589994_02592379.mRNA mRNA downstream 80047 2588450 ~ 2592379 (-) False CI01000029_02589994_02592379
CI01000029_02539755_02540836.mRNA mRNA downstream 131021 2539729 ~ 2541405 (-) False CI01000029_02539755_02540836
CI01000029_02532272_02537205.mRNA mRNA downstream 135221 2532200 ~ 2537205 (-) True CI01000029_02532272_02537205
CI01000029_02502175_02516608.mRNA mRNA downstream 155046 2502156 ~ 2517380 (-) True CI01000029_02502175_02516608
CI01000029_02738375_02739517.mRNA mRNA upstream 64627 2738054 ~ 2740239 (-) True CI01000029_02738375_02739517
CI01000029_02742245_02743081.mRNA mRNA upstream 68526 2741953 ~ 2744224 (-) True CI01000029_02742245_02743081
CI01000029_02753815_02761288.mRNA mRNA upstream 80321 2753748 ~ 2761527 (-) True CI01000029_02753815_02761288
CI01000029_02762066_02762926.mRNA mRNA upstream 88180 2761607 ~ 2763768 (-) True CI01000029_02762066_02762926
CI01000029_02764957_02770946.mRNA mRNA upstream 91530 2764957 ~ 2771393 (-) True CI01000029_02764957_02770946
TU173923 other downstream 79624 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 1378303 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU174756 other upstream 575350 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 1032796 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 1786916 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 2312681 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 2312758 4986185 ~ 4987425 (-) True G154415

Expression Profile