RNA id: TU174038



Basic Information


Item Value
RNA id TU174038
length 290
lncRNA type intronic
GC content 0.34
exon number 1
gene id G153248
representative True

Chromosome Information


Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2726135 ~ 2726424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAGAGAGATCATTGAGGAAATGAAAAATAAAGTGAAGTATGTATGGAATCACTTTACAATATAGTTTTTTCTGGACATGACTGGTTTTCTTCAAGCCAACATGAAAAGGTGCCTCAGGTTGTTAAACTTACCAGTTTCTGAAAGCCCTCTGTGCAAAAATCCTTAAATACTAATTCAAATGAGAAAGATGCATATATGTTCATTTCATACCAAAGTCAGTCTTGAGTTTTGATAGATGCATGATAGTCCAATATGACAAGAAGCCTATTAGCTTTTCTTTACACTGCATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU174035 lncRNA downstream 2295 2723608 ~ 2723840 (-) True G153245
TU174034 lncRNA downstream 3542 2722297 ~ 2722593 (-) True G153244
TU174033 lncRNA downstream 3994 2721831 ~ 2722141 (-) True G153243
TU174030 lncRNA downstream 7477 2718451 ~ 2718658 (-) True G153240
TU173994 lncRNA downstream 13984 2658813 ~ 2712151 (-) True G153208
TU174040 lncRNA upstream 3470 2729894 ~ 2730161 (-) True G153250
TU174041 lncRNA upstream 4131 2730555 ~ 2730775 (-) True G153251
TU174046 lncRNA upstream 21673 2748097 ~ 2748310 (-) True G153256
TU174049 lncRNA upstream 86699 2813123 ~ 2814507 (-) True G153259
TU174067 lncRNA upstream 90178 2816602 ~ 2817026 (-) True G153277
CI01000029_02593889_02603627.mRNA mRNA downstream 122508 2593391 ~ 2603627 (-) True CI01000029_02593889_02603627
CI01000029_02589994_02592379.mRNA mRNA downstream 133756 2588450 ~ 2592379 (-) False CI01000029_02589994_02592379
CI01000029_02539755_02540836.mRNA mRNA downstream 184730 2539729 ~ 2541405 (-) False CI01000029_02539755_02540836
CI01000029_02532272_02537205.mRNA mRNA downstream 188930 2532200 ~ 2537205 (-) True CI01000029_02532272_02537205
CI01000029_02502175_02516608.mRNA mRNA downstream 208755 2502156 ~ 2517380 (-) True CI01000029_02502175_02516608
CI01000029_02738375_02739517.mRNA mRNA upstream 11630 2738054 ~ 2740239 (-) True CI01000029_02738375_02739517
CI01000029_02742245_02743081.mRNA mRNA upstream 15529 2741953 ~ 2744224 (-) True CI01000029_02742245_02743081
CI01000029_02753815_02761288.mRNA mRNA upstream 27324 2753748 ~ 2761527 (-) True CI01000029_02753815_02761288
CI01000029_02762066_02762926.mRNA mRNA upstream 35183 2761607 ~ 2763768 (-) True CI01000029_02762066_02762926
CI01000029_02764957_02770946.mRNA mRNA upstream 38533 2764957 ~ 2771393 (-) True CI01000029_02764957_02770946
TU173923 other downstream 133333 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 1432012 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU174756 other upstream 522353 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 979799 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 1733919 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 2259684 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 2259761 4986185 ~ 4987425 (-) True G154415

Expression Profile