RNA id: TU174049



Basic Information


Item Value
RNA id TU174049
length 1265
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G153259
representative True

Chromosome Information


Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2813123 ~ 2814507 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCACAACTGATTTTAATGCAGTAGTTGTATCTGAGCATATACATAGACGTTATTTAGCTGTAATAGAGGAAATATGCAACAGTGAAAAATATGCACTCTGAGGGAACTTTTTACAGCTTAAAATTACTACTTCTGCCTCCTACTGAGTAAACCGTATGCAATATTCAGAAGTTGTTGTGAAGGAAAAAGACACCTCTCTAATGATCTGATTCATTATTCACAGTGTGAGTTACAGATGGCGAGGGCGAGAGATTGCATCTATGTGCTAATGACGGCCTGTCAACGTGATACCGCCTCTCTATACAGCTTCCTTAGGATGGGAATAAGAGACTACAGATGTTAATGTATGCCTTTAAAAAACAAAAAAAAAAACAAAAAACACTACACAACAAGATTGGCCTGTGATTCATTCTATACTTGTGTTGACATGTTAGTAGATCACACATACTTCATGTTTGATTTTCCATTTGGCCTCTGGAGGATTTTTGGGGCCCTGGAGAAGTTTTGACATGCACTGACATTTGTGCTTTTTTCAGTTGCTTATAAACATATTAATGACAAAAGTGTCATTACACTGTATTCAGCATGAACTAGGCTACCATAATATGTGAGCAACATGTATGTACATGTTTGTATTTTTGAGAGAATAATCTTTATGTGTGGTTATTGAAAAAGCAAAAAACCTAAGTCACTGAAATACGGCCACAAAACAAATACTAAATATGTGTTCACAAGACTTCTGGGTATTGGAGGTTGTAGACTAGAATTTTTGCTTCAAAATGATGTAAAAACACCTGAGAAGACAAAGACCCGCATAATGACCTGCTTAATGAGACCTTTCAGTCAGGTAGGCTATGTGAGAGGAAACAAAAAAAAAAATCAAAGTACAAACTACTATGCGCTTTAGACCTCTTATTGAGTAGCAATGTGGCTTTGAAGAGTTTGTTTTCTAATATTTATGATCCCCTGAGTGAGAATACTTCAATATAAGAATCCAAAAATCAAAGAGAATGAAAGCAAAAGGGAAATATATACATGGTGTTCATCAAAACCCTGGCCTCTTTGCACGTCGAGCATGTTGCGTTACAAAAACAGCCTAAATTCCATGCAACATTTTCAGTCTCATTCTGTACCACAAGCACTTTCAGTCCCTGCTGATCTTCAGATTTCCTTCTAGCTGCTCCTTGGTAAGATGCTCCTCATGTCCGAGAGCACCATGGATCTGTAGTTGCGCTCCAGCCCCTCCATGTACTCCAGGTAATTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU174046 lncRNA downstream 64813 2748097 ~ 2748310 (-) True G153256
TU174041 lncRNA downstream 82348 2730555 ~ 2730775 (-) True G153251
TU174040 lncRNA downstream 82962 2729894 ~ 2730161 (-) True G153250
TU174038 lncRNA downstream 86699 2726135 ~ 2726424 (-) True G153248
TU174035 lncRNA downstream 89283 2723608 ~ 2723840 (-) True G153245
TU174067 lncRNA upstream 2095 2816602 ~ 2817026 (-) True G153277
TU174069 lncRNA upstream 7892 2822399 ~ 2822630 (-) True G153279
TU174070 lncRNA upstream 8557 2823064 ~ 2823301 (-) True G153280
TU174071 lncRNA upstream 10565 2825072 ~ 2825289 (-) True G153281
TU174072 lncRNA upstream 14751 2829258 ~ 2829463 (-) True G153282
CI01000029_02764957_02770946.mRNA mRNA downstream 41730 2764957 ~ 2771393 (-) True CI01000029_02764957_02770946
CI01000029_02762066_02762926.mRNA mRNA downstream 49355 2761607 ~ 2763768 (-) True CI01000029_02762066_02762926
CI01000029_02753815_02761288.mRNA mRNA downstream 51596 2753748 ~ 2761527 (-) True CI01000029_02753815_02761288
CI01000029_02742245_02743081.mRNA mRNA downstream 68899 2741953 ~ 2744224 (-) True CI01000029_02742245_02743081
CI01000029_02738375_02739517.mRNA mRNA downstream 72884 2738054 ~ 2740239 (-) True CI01000029_02738375_02739517
CI01000029_02837412_02857934.mRNA mRNA upstream 22256 2836763 ~ 2857940 (-) True CI01000029_02837412_02857934
CI01000029_02957572_02962601.mRNA mRNA upstream 142920 2957427 ~ 2963354 (-) True CI01000029_02957572_02962601
CI01000029_03382508_03395312.mRNA mRNA upstream 567843 3382350 ~ 3395312 (-) True CI01000029_03382508_03395312
CI01000029_03397097_03444565.mRNA mRNA upstream 581632 3396139 ~ 3444565 (-) True CI01000029_03397097_03444565
CI01000029_03503783_03509429.mRNA mRNA upstream 689156 3503663 ~ 3509429 (-) True CI01000029_03503783_03509429
TU173923 other downstream 220321 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 1519000 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU174756 other upstream 434270 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 891716 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 1645836 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 2171601 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 2171678 4986185 ~ 4987425 (-) True G154415

Expression Profile