RNA id: TU174071


Basic Information

Item Value
RNA id TU174071
length 218
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G153281
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2825072 ~ 2825289 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAGTGTTTGAAACCAAGCCTACATGCAGAGTTCAGTTTAACTTAATAAACTTTATGTTGTTAAACTTGATGTGCGAAGCAAACTGTTAGCTGAAATATCCACAAAAATAAAAACAACTGATGTAAGATTGTGCGGTTTATCTATCCATCACGTGTGTGTGAAAGTTATGTTTATTTCTACAGGAACATTAAGAAGTAGTAGTGGCCACGAGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174070 lncRNA downstream 1771 2823064 ~ 2823301 (-) True G153280
TU174069 lncRNA downstream 2442 2822399 ~ 2822630 (-) True G153279
TU174067 lncRNA downstream 8046 2816602 ~ 2817026 (-) True G153277
TU174049 lncRNA downstream 10565 2813123 ~ 2814507 (-) True G153259
TU174046 lncRNA downstream 76762 2748097 ~ 2748310 (-) True G153256
TU174072 lncRNA upstream 3969 2829258 ~ 2829463 (-) True G153282
TU174073 lncRNA upstream 9983 2835272 ~ 2835498 (-) True G153283
TU174074 lncRNA upstream 10288 2835577 ~ 2835779 (-) True G153284
TU174075 lncRNA upstream 14089 2839378 ~ 2839661 (-) True G153285
TU174076 lncRNA upstream 22915 2848204 ~ 2848439 (-) True G153286
CI01000029_02764957_02770946.mRNA mRNA downstream 53679 2764957 ~ 2771393 (-) True CI01000029_02764957_02770946
CI01000029_02762066_02762926.mRNA mRNA downstream 61304 2761607 ~ 2763768 (-) True CI01000029_02762066_02762926
CI01000029_02753815_02761288.mRNA mRNA downstream 63545 2753748 ~ 2761527 (-) True CI01000029_02753815_02761288
CI01000029_02742245_02743081.mRNA mRNA downstream 80848 2741953 ~ 2744224 (-) True CI01000029_02742245_02743081
CI01000029_02738375_02739517.mRNA mRNA downstream 84833 2738054 ~ 2740239 (-) True CI01000029_02738375_02739517
CI01000029_02837412_02857934.mRNA mRNA upstream 11474 2836763 ~ 2857940 (-) True CI01000029_02837412_02857934
CI01000029_02957572_02962601.mRNA mRNA upstream 132138 2957427 ~ 2963354 (-) True CI01000029_02957572_02962601
CI01000029_03382508_03395312.mRNA mRNA upstream 557061 3382350 ~ 3395312 (-) True CI01000029_03382508_03395312
CI01000029_03397097_03444565.mRNA mRNA upstream 570850 3396139 ~ 3444565 (-) True CI01000029_03397097_03444565
CI01000029_03503783_03509429.mRNA mRNA upstream 678374 3503663 ~ 3509429 (-) True CI01000029_03503783_03509429
TU173923 other downstream 232270 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 1530949 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU174756 other upstream 423488 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 880934 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 1635054 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 2160819 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 2160896 4986185 ~ 4987425 (-) True G154415

Expression Profile