RNA id: TU174030



Basic Information


Item Value
RNA id TU174030
length 208
lncRNA type intronic
GC content 0.50
exon number 1
gene id G153240
representative True

Chromosome Information


Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2718451 ~ 2718658 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GATGAAGAGTTCAAGGTGTTGCCCTGGCCTCCAAATTCCCCAGATCTCAATCCAATTGAGCATCTGTGGGATGTGCTGGACCAATAGTTCGATCCACTGTGGTTCCACCTTGCAACCTACAGGACTTGAAGGATCTGCTGCAAACGTCTTGGTGCCAGATACCTCAGTACTCCTTCAGAGGTCTAGTAAAGTCCATGCCTTGGTGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU173994 lncRNA downstream 6300 2658813 ~ 2712151 (-) True G153208
TU173999 lncRNA downstream 45024 2672426 ~ 2673427 (-) True G153213
TU173983 lncRNA downstream 73169 2644979 ~ 2645282 (-) True G153198
TU173980 lncRNA downstream 77342 2640903 ~ 2641109 (-) True G153195
TU173977 lncRNA downstream 80805 2637282 ~ 2637646 (-) True G153192
TU174033 lncRNA upstream 3173 2721831 ~ 2722141 (-) True G153243
TU174034 lncRNA upstream 3639 2722297 ~ 2722593 (-) True G153244
TU174035 lncRNA upstream 4950 2723608 ~ 2723840 (-) True G153245
TU174038 lncRNA upstream 7477 2726135 ~ 2726424 (-) True G153248
TU174040 lncRNA upstream 11236 2729894 ~ 2730161 (-) True G153250
CI01000029_02593889_02603627.mRNA mRNA downstream 114824 2593391 ~ 2603627 (-) True CI01000029_02593889_02603627
CI01000029_02589994_02592379.mRNA mRNA downstream 126072 2588450 ~ 2592379 (-) False CI01000029_02589994_02592379
CI01000029_02539755_02540836.mRNA mRNA downstream 177046 2539729 ~ 2541405 (-) False CI01000029_02539755_02540836
CI01000029_02532272_02537205.mRNA mRNA downstream 181246 2532200 ~ 2537205 (-) True CI01000029_02532272_02537205
CI01000029_02502175_02516608.mRNA mRNA downstream 201071 2502156 ~ 2517380 (-) True CI01000029_02502175_02516608
CI01000029_02738375_02739517.mRNA mRNA upstream 19396 2738054 ~ 2740239 (-) True CI01000029_02738375_02739517
CI01000029_02742245_02743081.mRNA mRNA upstream 23295 2741953 ~ 2744224 (-) True CI01000029_02742245_02743081
CI01000029_02753815_02761288.mRNA mRNA upstream 35090 2753748 ~ 2761527 (-) True CI01000029_02753815_02761288
CI01000029_02762066_02762926.mRNA mRNA upstream 42949 2761607 ~ 2763768 (-) True CI01000029_02762066_02762926
CI01000029_02764957_02770946.mRNA mRNA upstream 46299 2764957 ~ 2771393 (-) True CI01000029_02764957_02770946
TU173923 other downstream 125649 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 1424328 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU174756 other upstream 530119 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 987565 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 1741685 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 2267450 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 2267527 4986185 ~ 4987425 (-) True G154415

Expression Profile