RNA id: TU244721



Basic Information


Item Value
RNA id TU244721
length 152
lncRNA type sense_over
GC content 0.45
exon number 1
gene id G215718
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6408502 ~ 6408653 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAAGGAAGCACACTATTGTTTACACTTGAGCAAGGGATGGCTTTTTTTCTCATTGAGACTCCCATGTGATTTCTTGCAGGCAGAGGCGAGGTTGCACAGAGGGCAGTTGAGGAGACCTGATCGTGGATGGAGCAGCAATAGAGCCGTCTGAGGTCCCCCGCTGCAGGTGTGGTTTTGTTCCAGGCCATCGGTACACTGACCTCGTCCTGTCTGCAGGTCAATTACTGGCTGTGGAGCTCCGTCAGATGGTTGTAACACACCTCCAACCCTAATCACTCACAAAGACACTGACTTTTGTCTGAACATCTGCTAAACTTCCAGCTGTACACTGAAAACCAGGAGATCTTTCTTTTTTATCAAGAAGAGCACCATTGGGAAACAACGGACAGCTTTTTCAGGAATTTGTAGAACCTAAATCATACATGACTGTTCCTGGGGTTGTTTAATGGTTTCGCAATTAAAGAAACTAACCAATATGGATACAGTATCTCTGAACACCTCCATGTTCTCTGGCAGACAGAGCATCTGTACGGATTCTCCCAATTTGTCCATGAGATCTATAGGTTTCACCAATGACACGGATTCTTGCCGCAGCAGTACGCTCTTACACTGGAACTTCTTTCTGGCTGGCAACTACATCAGTGTGGGTGAGTTCTTTTTATAAAGACAAAAAAGGTTCAAGGAAAAGTTTACCCAAAAACATAAAAGTCAATACCGCTCATTCCAAGCCCATTCATTTTGTTGGAGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU244702 lncRNA upstream 49672 6358573 ~ 6358830 (+) True G215702
TU244731 lncRNA upstream 129037 6279229 ~ 6279465 (+) True G215728
TU244725 lncRNA upstream 136118 6272147 ~ 6272384 (+) True G215722
TU244666 lncRNA upstream 235615 6171014 ~ 6172887 (+) True G215667
TU244662 lncRNA upstream 267054 6006657 ~ 6006759 (+) True G215663
TU244784 lncRNA downstream 282465 6706010 ~ 6707922 (+) True G215774
TU245642 lncRNA downstream 384222 6807767 ~ 6808079 (+) True G216552
TU245669 lncRNA downstream 517493 6941038 ~ 6952420 (+) True G216571
TU245671 lncRNA downstream 537729 6961274 ~ 6964309 (+) True G216573
TU245719 lncRNA downstream 650174 7073719 ~ 7074023 (+) True G216612
CI01000050_06343875_06352994.mRNA mRNA upstream 54261 6343319 ~ 6354241 (+) True CI01000050_06343875_06352994
CI01000050_06311242_06312395.mRNA mRNA upstream 95072 6311171 ~ 6313430 (+) True CI01000050_06311242_06312395
CI01000050_06307476_06308324.mRNA mRNA upstream 99806 6307476 ~ 6308696 (+) True CI01000050_06307476_06308324
CI01000050_06302230_06302696.mRNA mRNA upstream 105738 6301735 ~ 6302764 (+) True CI01000050_06302230_06302696
CI01000050_06269145_06275358.mRNA mRNA upstream 133144 6269145 ~ 6275358 (+) True CI01000050_06269145_06275358
CI01000050_06495478_06497593.mRNA mRNA downstream 71694 6495239 ~ 6497733 (+) True CI01000050_06495478_06497593
CI01000050_06518156_06558229.mRNA mRNA downstream 93909 6517454 ~ 6558818 (+) True CI01000050_06518156_06558229
CI01000050_06593242_06603104.mRNA mRNA downstream 169697 6593242 ~ 6603608 (+) True CI01000050_06593242_06603104
CI01000050_06610618_06631765.mRNA mRNA downstream 187073 6610618 ~ 6631770 (+) True CI01000050_06610618_06631765
CI01000050_06683472_06696145.mRNA mRNA downstream 259471 6683016 ~ 6696569 (+) True CI01000050_06683472_06696145
TU244521 other upstream 777299 5629610 ~ 5631203 (+) True G215539
TU244520 other upstream 777490 5629610 ~ 5631012 (+) False G215539
TU244350 other upstream 998854 5409444 ~ 5409648 (+) True G215383
TU243790 other upstream 1815453 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU243616 other upstream 2300222 4107582 ~ 4108280 (+) True G214717
TU244783 other downstream 237643 6661188 ~ 6665703 (+) True G215773

Expression Profile