RNA id: TU244725


Basic Information

Item Value
RNA id TU244725
length 238
lncRNA type intronic
GC content 0.42
exon number 1
gene id G215722
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6272147 ~ 6272384 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATTAGAGCGGAGACTGTGAGCCAGGGCTTCTTGTCCAACATCAGTGCCTGACCTCACAAATGCGCTTCTAGAAGAATGGTCAAAAATTCCCATAAACACACTCCCAAACCTTATGGAAAGCCTTCCCAGAAGAGCTGAAGCTGTTATGCTCCATATTAAACCCTATACGGATTAAGAATGGGATGTCATTAAATTGAATGTAAAGGCAGACATCCCAAAACTTTTGGCTATATATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244666 lncRNA upstream 99260 6171014 ~ 6172887 (+) True G215667
TU244662 lncRNA upstream 130699 6006657 ~ 6006759 (+) True G215663
TU244686 lncRNA upstream 298601 5973320 ~ 5973546 (+) True G215687
TU244678 lncRNA upstream 329180 5942747 ~ 5942967 (+) True G215679
TU244654 lncRNA upstream 354227 5917606 ~ 5917920 (+) True G215656
TU244731 lncRNA downstream 6845 6279229 ~ 6279465 (+) True G215728
TU244702 lncRNA downstream 86189 6358573 ~ 6358830 (+) True G215702
TU244721 lncRNA downstream 136118 6408502 ~ 6408653 (+) True G215718
TU244784 lncRNA downstream 433626 6706010 ~ 6707922 (+) True G215774
TU245642 lncRNA downstream 535383 6807767 ~ 6808079 (+) True G216552
CI01000050_06261124_06264271.mRNA mRNA upstream 7317 6261124 ~ 6264830 (+) True CI01000050_06261124_06264271
CI01000050_06086847_06251892.mRNA mRNA upstream 20255 6086847 ~ 6251892 (+) False CI01000050_06086847_06251892
CI01000050_05881217_05905972.mRNA mRNA upstream 365866 5881217 ~ 5906281 (+) True CI01000050_05881217_05905972
CI01000050_05845707_05846552.mRNA mRNA upstream 425307 5845279 ~ 5846840 (+) True CI01000050_05845707_05846552
CI01000050_05819139_05823958.mRNA mRNA upstream 448189 5819074 ~ 5823958 (+) True CI01000050_05819139_05823958
CI01000050_06302230_06302696.mRNA mRNA downstream 29351 6301735 ~ 6302764 (+) True CI01000050_06302230_06302696
CI01000050_06307476_06308324.mRNA mRNA downstream 35092 6307476 ~ 6308696 (+) True CI01000050_06307476_06308324
CI01000050_06311242_06312395.mRNA mRNA downstream 38787 6311171 ~ 6313430 (+) True CI01000050_06311242_06312395
CI01000050_06343875_06352994.mRNA mRNA downstream 70935 6343319 ~ 6354241 (+) True CI01000050_06343875_06352994
CI01000050_06413155_06428371.mRNA mRNA downstream 140128 6412512 ~ 6428983 (+) False CI01000050_06413155_06428371
TU244521 other upstream 640944 5629610 ~ 5631203 (+) True G215539
TU244520 other upstream 641135 5629610 ~ 5631012 (+) False G215539
TU244350 other upstream 862499 5409444 ~ 5409648 (+) True G215383
TU243790 other upstream 1679098 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU243616 other upstream 2163867 4107582 ~ 4108280 (+) True G214717
TU244783 other downstream 388804 6661188 ~ 6665703 (+) True G215773

Expression Profile