RNA id: CI01000050_05881217_05905972.mRNA


Basic Information

Item Value
RNA id CI01000050_05881217_05905972.mRNA
length 2886
RNA type mRNA
GC content 0.48
exon number 18
gene id CI01000050_05881217_05905972
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5881217 ~ 5906281 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTCAGGGAGTGTTGTGTTTGCATGTGATAGAGAGGGTTTCCAAGTGTTTGTGTTGTGTATTTTATGTCTTCATTTGCAAAAACGTGTCTTGTGGGTGTGTAATCCCTTTGTTTCACCTCCTTACAAGATTAAATGTGAGATGTCTCTGGTTTTCCCGCGACCCAATACCAGTGTGATCGGCAAGAAGGACAAGCGACTCATGGCTGAGGTGAACGCCTCTCCGCTCAAACACTTTGTCACCGCCAAGAAGAAGATCAATGGCATCTTTGAACAGCTGGGCGCCTACATCAAAGAAAGCTCAGCCTTTCTGGAAGGTGTCTGCTTTCATTACTCTTGGCAATTCAATCCACTCCTTGTTTCAGGAGCTCAAAAGCACTCTGTTGCATGCTGTACATCTGTCAAGCTGATAAGAGGAACCTGGCTGATTGTGACTTGCATGCCTCAGATAACTAAGACAGAAACCTACAGCAATGAAGAACTGGATCCTGTTACCACAGAGGAGCAGGTGGCAGAGGTGCGGGGATACCTGTCCAAAGTGGCAGGGATTGGGGAAGTCTTGTCCCGGAGACACATGAAGGTGGTCTTCTTTGGCAGAACCAGTAATGGGAAGAGCTCTGTCATTAACGCCATGCTCTGGGACAAAGTGCTGCCATCTGGAATTGGACACACCACCAACTGCTTCCTACGGGTGGAAGGCACAGATGGAAATGAGGCTTTCCTGCTCACCGAAGGATCGGATGAAAGAAAGAGTGTTAAAACGGTGAATCAGCTGGCCCATGCCTTACATCAGGATGAGGATTTGGATGCAGGCAGTCTTGTGTGTGTCATGTGGCCTAAAGCAAAGTGTGCATTGCTACGTGATGACCTGGTACTTGTGGACAGCCCTGGCATCGATGTCACAACAGAGTTGGACAGCTGGATTGACAAATTCTGCCTTGATGCTGACGTTTTTGTGCTGGTGGCCAATTCAGAGTCCACTTTAATGCAAACAGAAAAATCATTCTTTCACAAAGTGAACGAGCGCCTCTCCAGCCCCAATATCTTCATCCTGAACAACCGCTGGGATGCCTCAGCCAGCGAGCCCGAGTACATGGAAGAGGTGAGACGGCAGCACATGGACCGCTGCAGTAGTTTTTTAGTGGATGAGCTGCGGGTGGTGGACCGAGCTCAGGCCAGTGATCGGATCTTCTTCGTCTCTGCTAAAGAAGCTCTTCAGGCACGTGTCCAGAAAGCCCAGGGAATGCCTGAAGCAGGTGGTGCTCTGGCTGAAGGTTTTCAAGCGAGAATGTTTGAGTTTCAGAATTTTGAAAGGCGTTTTGAGGAGTGCATCTCCCAGTCAGCAGTGAAGACTAAGTTCGAGCAGCACACAATGAGAGCCAAGCAGATTTCTGAAGCTCTGCGTCTGATCATGGACTCTGTGCACATTGCAGCTCAAGAGCAGAGGATTCATTGTTTAGAGATGAAGGAGGAGAGGGAGGACAGGCTGGAGTTCATCGATAAACAGCTGGATCTGCTCACTCTGGACTGTAAGAGCAAAATCAAAAAGATCACAGAGGAGGTGGAGAAACAGGTATCTAATGCTATGGCAGAGGAGATCCGGAGACTGGCTGTACTAGTGGATGACTTCCACATGGACTTTCATCCTTCACAAGTGGTGCTCAAAGTATACAAGAACGAGCTCCACAGGCACATAGAGGACGGTCTTGGCAGGAATATGTCAGACAGATGCTCCAGTGCGATAACTGTAGCGCTGCAATCCACACAGACTGAAATGATAGGTCAGTATCTCTCTCATTCGGGTCTGAAGCCCTTGCTGCCCATCGGCATTCGAGAGCAGGTGGATAAGATTGTGCCCAGACAGTGCTTCGCCCTCAGCTACGACCTCAACTGTGACAAACTCTGCAGCGACTTCCAGGAAGACATCAGCTTTCACTTCTCCCTGGGATGGACCATGCTGGTCAACCGTTTCCTGGGTCCCAAAAACACACGCCGCGCTCTCATGGGCTACAATGACCAGGTTCCCAGGCCCCTGGCCATCACTCCAGTCAGCACTAGTATGCCACCTTACCCTCAAGGATCCATGACCCAGGAAGAGCTTATGGTTTCTATGGTGACAGGATTGGCATCACTCACCTCTCGGACATCAATGGGCATTATAGTTGTTGGAGGAGTGATCTGGAAAGCAGTGGGCTGGAGGCTCATTGCTCTGTCTGTGGGTCTCTATGGACTGCTGTACGTGTATGAGAGACTCACATGGACCACTAGGGCCAAAGAAAGAACGTTTAAAAGACAGTTTGTGGACTACGCCAGTGAGAAACTACAGCTCATCGTCAGCTACACGGGGTCCAACTGCAGCCATCAGGTTCAGCAGGAGCTGGCCAGCACCTTCTCTCAGCTGTGTCAGCAGGTGGATGTGACCAGACAGCAGTTGGAGGATGAGATTCGGGATTTGAACAGCAAGATCGAACAGTTGGACTCCCTGCAGAGTAAAGCCAAACTGCTCAGGAATAAAGCTGGTTGGCTGGACAGTGAGCTAAACATGTTTACCCAGCAGTACCTTCAGCAGGGTCGATAGAGATTCTGTCTGAAGCAACTGTTTGAGCGTGTAGAGCAGCTCATCTCCCACTGCTGCACTTTTAATATCTACTGCAGATAATCTAACACTTAGCCACGCTTTCAACCATTTATTCGAGCATACCAAATATTGGTCATTTCATGTTTTGTTTTGTTTTTTGCCTTTGAGAGTAGTGACATGTGCCACTTTAAAGAGAGCTTCCTTTTGTTTTTGTACACACTGTTTCTTTTGTATTTAATACAGGGTAATTATTTATTCTTGACATAAGAGGTCGTGTAAAGTGGTTGATCTCTTTGTAGATTGTGTTAT

Function

GO:

id name namespace
GO:0019896 axonal transport of mitochondrion biological_process

KEGG:

id description
K06030 MFN2, FZO1; mitofusin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244649 lncRNA upstream 6354 5874264 ~ 5874863 (+) True G215651
TU244639 lncRNA upstream 41064 5839256 ~ 5840153 (+) True G215641
TU244644 lncRNA upstream 43362 5837641 ~ 5837855 (+) True G215646
TU244643 lncRNA upstream 43621 5837264 ~ 5837596 (+) True G215645
TU244625 lncRNA upstream 55558 5825219 ~ 5825659 (+) True G215631
TU244651 lncRNA downstream 3441 5909722 ~ 5909955 (+) True G215653
TU244654 lncRNA downstream 11325 5917606 ~ 5917920 (+) True G215656
TU244678 lncRNA downstream 36466 5942747 ~ 5942967 (+) True G215679
TU244686 lncRNA downstream 67039 5973320 ~ 5973546 (+) True G215687
TU244662 lncRNA downstream 100376 6006657 ~ 6006759 (+) True G215663
CI01000050_05845707_05846552.mRNA mRNA upstream 34377 5845279 ~ 5846840 (+) True CI01000050_05845707_05846552
CI01000050_05819139_05823958.mRNA mRNA upstream 57259 5819074 ~ 5823958 (+) True CI01000050_05819139_05823958
CI01000050_05774182_05793383.mRNA mRNA upstream 87319 5774182 ~ 5793898 (+) True CI01000050_05774182_05793383
CI01000050_05545206_05550365.mRNA mRNA upstream 330667 5543514 ~ 5550550 (+) True CI01000050_05545206_05550365
CI01000050_05529488_05530765.mRNA mRNA upstream 349795 5527162 ~ 5531422 (+) False CI01000050_05529488_05530765
CI01000050_06086847_06251892.mRNA mRNA downstream 180566 6086847 ~ 6251892 (+) False CI01000050_06086847_06251892
CI01000050_06261124_06264271.mRNA mRNA downstream 354843 6261124 ~ 6264830 (+) True CI01000050_06261124_06264271
CI01000050_06269145_06275358.mRNA mRNA downstream 362864 6269145 ~ 6275358 (+) True CI01000050_06269145_06275358
CI01000050_06302230_06302696.mRNA mRNA downstream 395454 6301735 ~ 6302764 (+) True CI01000050_06302230_06302696
CI01000050_06307476_06308324.mRNA mRNA downstream 401195 6307476 ~ 6308696 (+) True CI01000050_06307476_06308324
TU244521 other upstream 250014 5629610 ~ 5631203 (+) True G215539
TU244520 other upstream 250205 5629610 ~ 5631012 (+) False G215539
TU244350 other upstream 471569 5409444 ~ 5409648 (+) True G215383
TU243790 other upstream 1288168 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU243616 other upstream 1772937 4107582 ~ 4108280 (+) True G214717
TU244783 other downstream 754907 6661188 ~ 6665703 (+) True G215773

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070491 True 5369 mRNA 0.42 18 NC_007119.7 47897734 ~ 47948903 (+)