RNA id: TU244678


Basic Information

Item Value
RNA id TU244678
length 221
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G215679
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5942747 ~ 5942967 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAGCTCAAGCATGTTCAGTTGATGCATGCGAGAACCAATGAGGTTCATTCTCGTGTGTTACGCAGCAAGTTTGAGCTTCTGGAAGAGGTTTGTTCTCATGTGTCAAGCAGGTTCGGTTGAGCTTCTGTTTGTGTTCGCTGATCAATTTTTATATGTGAATAAAAGCCTGAATTCAATCTGTTCAATGGAATAGTTTTATAATCTCTTTTTGAAGCGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244654 lncRNA upstream 24827 5917606 ~ 5917920 (+) True G215656
TU244651 lncRNA upstream 32792 5909722 ~ 5909955 (+) True G215653
TU244649 lncRNA upstream 67884 5874264 ~ 5874863 (+) True G215651
TU244639 lncRNA upstream 102594 5839256 ~ 5840153 (+) True G215641
TU244644 lncRNA upstream 104892 5837641 ~ 5837855 (+) True G215646
TU244686 lncRNA downstream 30353 5973320 ~ 5973546 (+) True G215687
TU244662 lncRNA downstream 63690 6006657 ~ 6006759 (+) True G215663
TU244666 lncRNA downstream 228047 6171014 ~ 6172887 (+) True G215667
TU244725 lncRNA downstream 329180 6272147 ~ 6272384 (+) True G215722
TU244731 lncRNA downstream 336262 6279229 ~ 6279465 (+) True G215728
CI01000050_05881217_05905972.mRNA mRNA upstream 36466 5881217 ~ 5906281 (+) True CI01000050_05881217_05905972
CI01000050_05845707_05846552.mRNA mRNA upstream 95907 5845279 ~ 5846840 (+) True CI01000050_05845707_05846552
CI01000050_05819139_05823958.mRNA mRNA upstream 118789 5819074 ~ 5823958 (+) True CI01000050_05819139_05823958
CI01000050_05774182_05793383.mRNA mRNA upstream 148849 5774182 ~ 5793898 (+) True CI01000050_05774182_05793383
CI01000050_05545206_05550365.mRNA mRNA upstream 392197 5543514 ~ 5550550 (+) True CI01000050_05545206_05550365
CI01000050_06086847_06251892.mRNA mRNA downstream 143880 6086847 ~ 6251892 (+) False CI01000050_06086847_06251892
CI01000050_06261124_06264271.mRNA mRNA downstream 318157 6261124 ~ 6264830 (+) True CI01000050_06261124_06264271
CI01000050_06269145_06275358.mRNA mRNA downstream 326178 6269145 ~ 6275358 (+) True CI01000050_06269145_06275358
CI01000050_06302230_06302696.mRNA mRNA downstream 358768 6301735 ~ 6302764 (+) True CI01000050_06302230_06302696
CI01000050_06307476_06308324.mRNA mRNA downstream 364509 6307476 ~ 6308696 (+) True CI01000050_06307476_06308324
TU244521 other upstream 311544 5629610 ~ 5631203 (+) True G215539
TU244520 other upstream 311735 5629610 ~ 5631012 (+) False G215539
TU244350 other upstream 533099 5409444 ~ 5409648 (+) True G215383
TU243790 other upstream 1349698 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU243616 other upstream 1834467 4107582 ~ 4108280 (+) True G214717
TU244783 other downstream 718221 6661188 ~ 6665703 (+) True G215773

Expression Profile