RNA id: TU244731


Basic Information

Item Value
RNA id TU244731
length 237
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G215728
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6279229 ~ 6279465 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTTACATGCGAGTAAAAGCCTAAATTAAATCTGTTCATCATAACAAGCGATCGATTCTCTTTAGAAAATTTGGACTAAACTGCTCGATTCATATGGATTCGTTATCCGATCTCTTTATGAAGTTTTTGAAGCATCAAAGTGGTAGTTACAAAGGCAGTCTATGGAAGGAAATCTGACTGCATTCTGTCATCAAAAAGATCTTCATTTGTTTTTCTGAAGATGAACAGAAGTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244725 lncRNA upstream 6845 6272147 ~ 6272384 (+) True G215722
TU244666 lncRNA upstream 106342 6171014 ~ 6172887 (+) True G215667
TU244662 lncRNA upstream 137781 6006657 ~ 6006759 (+) True G215663
TU244686 lncRNA upstream 305683 5973320 ~ 5973546 (+) True G215687
TU244678 lncRNA upstream 336262 5942747 ~ 5942967 (+) True G215679
TU244702 lncRNA downstream 79108 6358573 ~ 6358830 (+) True G215702
TU244721 lncRNA downstream 129037 6408502 ~ 6408653 (+) True G215718
TU244784 lncRNA downstream 426545 6706010 ~ 6707922 (+) True G215774
TU245642 lncRNA downstream 528302 6807767 ~ 6808079 (+) True G216552
TU245669 lncRNA downstream 661573 6941038 ~ 6952420 (+) True G216571
CI01000050_06269145_06275358.mRNA mRNA upstream 3871 6269145 ~ 6275358 (+) True CI01000050_06269145_06275358
CI01000050_06261124_06264271.mRNA mRNA upstream 14399 6261124 ~ 6264830 (+) True CI01000050_06261124_06264271
CI01000050_06086847_06251892.mRNA mRNA upstream 27337 6086847 ~ 6251892 (+) False CI01000050_06086847_06251892
CI01000050_05881217_05905972.mRNA mRNA upstream 372948 5881217 ~ 5906281 (+) True CI01000050_05881217_05905972
CI01000050_05845707_05846552.mRNA mRNA upstream 432389 5845279 ~ 5846840 (+) True CI01000050_05845707_05846552
CI01000050_06302230_06302696.mRNA mRNA downstream 22270 6301735 ~ 6302764 (+) True CI01000050_06302230_06302696
CI01000050_06307476_06308324.mRNA mRNA downstream 28011 6307476 ~ 6308696 (+) True CI01000050_06307476_06308324
CI01000050_06311242_06312395.mRNA mRNA downstream 31706 6311171 ~ 6313430 (+) True CI01000050_06311242_06312395
CI01000050_06343875_06352994.mRNA mRNA downstream 63854 6343319 ~ 6354241 (+) True CI01000050_06343875_06352994
CI01000050_06413155_06428371.mRNA mRNA downstream 133047 6412512 ~ 6428983 (+) False CI01000050_06413155_06428371
TU244521 other upstream 648026 5629610 ~ 5631203 (+) True G215539
TU244520 other upstream 648217 5629610 ~ 5631012 (+) False G215539
TU244350 other upstream 869581 5409444 ~ 5409648 (+) True G215383
TU243790 other upstream 1686180 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU243616 other upstream 2170949 4107582 ~ 4108280 (+) True G214717
TU244783 other downstream 381723 6661188 ~ 6665703 (+) True G215773

Expression Profile