RNA id: TU244639



Basic Information


Item Value
RNA id TU244639
length 898
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G215641
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5839256 ~ 5840153 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGGAGCAGTAAAAATCATGTTGAGTGAATGTCATTTGTTTGAGGTCTGAATCAGTATGAACTTGATCATATCACTTTTTGGTAAATGTGTTTAATTTCGCATAATTTACACAATATAATTGTTCTTGTCTCAAACATAAATATATTAAGTTGATTGTAAGTGTATTGTTTCAGTTTTCAATAGAGCATCTTCCCCTTTTTTCAGAGAGACCTCAAAGTAGCACAAGTATAATAATGAAATTGTTCATACTGGCAGTTTTAGCAACAACAACAACAACAAAAAAGAGCCTTGCATGATCGGAGCACACAAACCTGTGTTCCAAGAGTGTGACACATTTGCTAATATCTGCCAAATGAAGATGCAGCCTATTCTTGTGCAATTAAACTCAATGCAGCCTGCGACTGGTGGGGAAGCCCATGGTTTGTTTTTTCATATTGTTAGCAGAAAGACTGAATTCAAACATCACCAACAAGCACCATTGTGTCTCAGAGTAGAGACTGTCTAAAAAAGCGTTACTTAAGTTACTAAAAGTTACTTAAGATAAAAGCATCAGCTGAATGACAAACTAAGTCAGAGAAACTCCACATTTATTTTTTTTTAAAGATTATGGGACATTAATCAATTGGCTTAAGCCATGTTGATTGCACACAACAAACAGGACACAGAGACATACTAACTTGAGCTAACATCATCTGCATGTAACTTGAGCACAACGGTGGTGGCCTGATAATATTAAGTAAAGAAAAAAGACTTTAGTCTTTAATCAGTGATGCTCAGACATCGTTCAAATAAATACAAGCAATAATCCCTGTTCCCAGCTATGGCTCAGTATTTTTACTATAACCAGGTGTCAGATTAATTTCCTAATAAGTTCTTATTGTGAATGATTCGACTTCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU244644 lncRNA upstream 1401 5837641 ~ 5837855 (+) True G215646
TU244643 lncRNA upstream 1660 5837264 ~ 5837596 (+) True G215645
TU244625 lncRNA upstream 13597 5825219 ~ 5825659 (+) True G215631
TU244515 lncRNA upstream 41003 5795388 ~ 5798253 (+) True G215536
TU244572 lncRNA upstream 119803 5718964 ~ 5719453 (+) True G215588
TU244649 lncRNA downstream 34111 5874264 ~ 5874863 (+) True G215651
TU244651 lncRNA downstream 69569 5909722 ~ 5909955 (+) True G215653
TU244654 lncRNA downstream 77453 5917606 ~ 5917920 (+) True G215656
TU244678 lncRNA downstream 102594 5942747 ~ 5942967 (+) True G215679
TU244686 lncRNA downstream 133167 5973320 ~ 5973546 (+) True G215687
CI01000050_05819139_05823958.mRNA mRNA upstream 15298 5819074 ~ 5823958 (+) True CI01000050_05819139_05823958
CI01000050_05774182_05793383.mRNA mRNA upstream 45358 5774182 ~ 5793898 (+) True CI01000050_05774182_05793383
CI01000050_05545206_05550365.mRNA mRNA upstream 288706 5543514 ~ 5550550 (+) True CI01000050_05545206_05550365
CI01000050_05529488_05530765.mRNA mRNA upstream 307834 5527162 ~ 5531422 (+) False CI01000050_05529488_05530765
CI01000050_05407682_05409108.mRNA mRNA upstream 429839 5407682 ~ 5409417 (+) False CI01000050_05407682_05409108
CI01000050_05845707_05846552.mRNA mRNA downstream 5126 5845279 ~ 5846840 (+) True CI01000050_05845707_05846552
CI01000050_05881217_05905972.mRNA mRNA downstream 41064 5881217 ~ 5906281 (+) True CI01000050_05881217_05905972
CI01000050_06086847_06251892.mRNA mRNA downstream 246694 6086847 ~ 6251892 (+) False CI01000050_06086847_06251892
CI01000050_06261124_06264271.mRNA mRNA downstream 420971 6261124 ~ 6264830 (+) True CI01000050_06261124_06264271
CI01000050_06269145_06275358.mRNA mRNA downstream 428992 6269145 ~ 6275358 (+) True CI01000050_06269145_06275358
TU244521 other upstream 208053 5629610 ~ 5631203 (+) True G215539
TU244520 other upstream 208244 5629610 ~ 5631012 (+) False G215539
TU244350 other upstream 429608 5409444 ~ 5409648 (+) True G215383
TU243790 other upstream 1246207 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU243616 other upstream 1730976 4107582 ~ 4108280 (+) True G214717
TU244783 other downstream 821035 6661188 ~ 6665703 (+) True G215773

Expression Profile