RNA id: TU244515


Basic Information

Item Value
RNA id TU244515
length 2662
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G215536
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5795388 ~ 5798253 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATCAGGTAGTAGGTAAATCAATTTTTAAACAGAAACCTGGCGGAAGAGTTCAGAGCTAGGCTTTATTTGGGTAATAGAAACAGTATTGTAATGTAATAACATGGTTGAATGGATATTCAAATAATTCATCACTTGAAATAAATGACATGCGTTTAATCAGAGTTTCGGTGAATTGAGGCTAATGATCTACAAATTTTACACCTATCAAGTTGCAGGCATAATCTTCATGCAGAACTTCACATTACATTAAAACAAAAAATATATATGTAAAAAACAAACACTATGATGCATGTTTAAAAAAAACCAACAAGAGATTTAATTTCAACAAGCCACTATTTCTTTATGCATAGCAAAAAAGCAAACAGAAATTGGCCAACAAAAGTGCATAAGCATGAAAAATACTCTGAACCCGTAATCGCTCAACAGCGGGAAACCTTCATTGGCAGAATGTTCCTCCGTGTCATGCATCCTTAAGCAAACAGTTTATTTAAAGCCAACCTGACCAACATCACCTGAGAAATTAACAGCATATCTATTTGCCTTTGATAAAAATAAAAGCATAACTTCATTTTAGCTTTAAATAATGTTGTAGCATCCAGTATCATCCATATTTTCTGTAACTTAAGAAGGGTACAAACAATTTGTCTACATTAAGGTTGAAGAAATAAGGCATGAATGATCAATAAAGCACACGAACATGAGTGGAACAATGCACATGTAACAGTAGTACACTTCTTTTCATGAGGTTAACAGTAGCCACAGTAAGAAATTCACTTTGAAATGCGCAGCCACTGGACTTGAACAGAGTGTGAAAATAAATGTCAGGCAGGTGCTTCCTGTGGTGGACACATTTGAGTACACACTATCTAACCAAGATTTTTTTTTTTTTTTTTTTTTTAAACTTATGGAAGCTTGTTTCCATCATGAAATCCATAATTTTATCTCACAATTCTGACTTTTTTTCCTTGCAATTATGAGTTTATATCTTAAAATTCTGACTTTATAACTCACAATTATGAGTTAAATTCAATTAAACCTCAGAATTGCAAGGTAAAAATTTAAAGACCTGCAATCGCGAGAAAAAAAGTCAATTATGAGTTATAACGTCAGAATTGCGTCATAAAAACTCGCAATTCTGAGAAAAAAAAAAGTCAGAATTGTGAGATAAAAAGGTCGCAATTACCTTTTTTATTTTTTTTATTTAGTGGCGGAAACAAGCTTCCATAGTAACTTAAACAGGCTTTTTTTGAAGAGATAATACTGTTTGGAAAACAGAAAGTTATTGTGTCCACAGAATTACTTTCATAACTTTTTGTTACACTAATGAGGATTTGATTTTTCACATTGCATTAGTGAGAATTGAGCTTGACTATGCAAAACATTTTGTTTTTTTAACTTGATTTTGGAGTGAAATATGACCCAGGCATTTCTTTGTGAAAATACATTTTGTAAAGACAGCAGAGTAGATGGTAATGAATGTGAATTTAAAGGTAAATGGGTCTAGACCTAAAAAAAAAAATTCCACAATTATTAGAGATTTCTTTGTCAGCAATGTGAGTACTTAATTAATATCTTCAGTAAAGGTCCAAAGAGTTTCACACCTTATCAAATCACTGCAGAACAGAATAAAATACATTTTACAGAATGCAAGCCTTAGTTTTAATTTGATAGCAGTGCTGTTCAGAAGGCATGCAGTTTCTCTATGACAAGCTTTGAAACCTTTTTAGTCACACTGGACCCCATTCATGAAACAAACAGAACGAATTTCCATCCAAATTGTTCATAAAAACGATGTGCGATCAATTGCATACTTTGAATTAAAGGTGACCTATTATGCCCTTTTTTTACAAGTCTCAGTTGTCCCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATACCCCATGGATTTTTTTATTATACCATGTTTTAACTGCCTATTTTTGGGTGGGAGAAAAATGCACTGATTTGGTGTGTGTACCTTTAAATACAAATGAGTTTGTGCTCCCCGCCCCCAAGCTCATTGTTCCAATACACTGAGGCATAAACAAGAGAAGCTCACACAGCAAATATAACTCAAAAGGGATCATTACAAACTGTTCGTGACACAGCATATCAGATAACGTAGGTATGGCATGTATTTTGTGGATGTTTGCTAACATTCGATTCTGAATGGATTTGATAGCGTGCTGCATGGCTAACGTGGCTAAAGCTACACACTGTTGGACAGCCTCAATAAGAATGAAGATTCATTTATGAATTTGCAAGCATTTTTGGGTTAAAAATGAAAATAACGAAATGGCTCAGGTCTCCGTGAATACAGTAAGAAACAATGATAACTTTAGCCACATTTAACAGTACATTAGCAACGTGTTAACTAAACACATTCAGAAAGACAATTTGCAAACATCAAGAAATATATATGAAATTGAATCACGAACAGCTGGTATCGATCCATCTTTTATAATATTAAGGTAGAACTACTGAACTCACATGAACTGTTTTAAATATGTTTTTAGTACCTTTATGGATCTTGAGAGAGGAAATGTCATTGCTGTGAATGCAGGCCTCACTGAGCCATCGGATTTAATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244572 lncRNA upstream 75935 5718964 ~ 5719453 (+) True G215588
TU244528 lncRNA upstream 157849 5634150 ~ 5637539 (+) True G215544
TU244524 lncRNA upstream 166023 5621501 ~ 5629365 (+) True G215541
TU244540 lncRNA upstream 174699 5620481 ~ 5620689 (+) True G215556
TU244535 lncRNA upstream 183341 5611598 ~ 5612047 (+) True G215551
TU244625 lncRNA downstream 26966 5825219 ~ 5825659 (+) True G215631
TU244643 lncRNA downstream 39011 5837264 ~ 5837596 (+) True G215645
TU244644 lncRNA downstream 39388 5837641 ~ 5837855 (+) True G215646
TU244639 lncRNA downstream 41003 5839256 ~ 5840153 (+) True G215641
TU244649 lncRNA downstream 76011 5874264 ~ 5874863 (+) True G215651
CI01000050_05774182_05793383.mRNA mRNA upstream 1490 5774182 ~ 5793898 (+) True CI01000050_05774182_05793383
CI01000050_05545206_05550365.mRNA mRNA upstream 244838 5543514 ~ 5550550 (+) True CI01000050_05545206_05550365
CI01000050_05529488_05530765.mRNA mRNA upstream 263966 5527162 ~ 5531422 (+) False CI01000050_05529488_05530765
CI01000050_05407682_05409108.mRNA mRNA upstream 385971 5407682 ~ 5409417 (+) False CI01000050_05407682_05409108
CI01000050_05388158_05405937.mRNA mRNA upstream 389347 5388062 ~ 5406041 (+) True CI01000050_05388158_05405937
CI01000050_05819139_05823958.mRNA mRNA downstream 20821 5819074 ~ 5823958 (+) True CI01000050_05819139_05823958
CI01000050_05845707_05846552.mRNA mRNA downstream 47026 5845279 ~ 5846840 (+) True CI01000050_05845707_05846552
CI01000050_05881217_05905972.mRNA mRNA downstream 82964 5881217 ~ 5906281 (+) True CI01000050_05881217_05905972
CI01000050_06086847_06251892.mRNA mRNA downstream 288594 6086847 ~ 6251892 (+) False CI01000050_06086847_06251892
CI01000050_06261124_06264271.mRNA mRNA downstream 462871 6261124 ~ 6264830 (+) True CI01000050_06261124_06264271
TU244521 other upstream 164185 5629610 ~ 5631203 (+) True G215539
TU244520 other upstream 164376 5629610 ~ 5631012 (+) False G215539
TU244350 other upstream 385740 5409444 ~ 5409648 (+) True G215383
TU243790 other upstream 1202339 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU243616 other upstream 1687108 4107582 ~ 4108280 (+) True G214717
TU244783 other downstream 862935 6661188 ~ 6665703 (+) True G215773

Expression Profile